Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00049 ATGGAGCTGTACGGTCGGAACCCGGCTAGGAATGGGTCACAACCGGGTAATCAATCCGAATGGCGCCCATCTGGCGGCGAAACTGGGCTTGAAGAGTCGATGTGGCAGTTAACCATCGGCGGCGGTGAATCTTACCCGGAGCGACCCGGCGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTGGCAGGTGCCGTTACAATCATCCTCGTGATCGCGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGATTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAGCCAAGCTCCTCTAAATATTTATGGATACCCGTTACGCCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCATAACTTGTAAATTCCATCATCCTCATCCAGCTGGCACGTCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTTGCTGAACAGTTTGGGGGGGCATCCAGCAGTTTGAGAGTGCCTAGGCCTTCAATATTGCCTGGTTCATATATGCAAGGGGCTTATGGTCCTGTCCTCCTTTCTCCAGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTACACGGCACCTCTGAGTCCTGTGTTATCTCCTGGTGCTCAATCGGGTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCCGTTCCATCAACTACTGGCCTTTCAGGCAGTGGCCTGAATGAACCGATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATCAGCATGTCGATTTCATCATCCCAGGGACCGGACCGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTGCGTCCGTATGATTGA 1032 0.5107 MELYGRNPARNGSQPGNQSEWRPSGGETGLEESMWQLTIGGGESYPERPGVPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPHPAGTSMPASAPQFYQQVQSPTVPLAEQFGGASSSLRVPRPSILPGSYMQGAYGPVLLSPGVVPFPGWSPYTAPLSPVLSPGAQSGVGATSLYGVTQLSSSTSAFARPYTPVPSTTGLSGSGLNEPIFPERPGEPECQYYLRTGDCKYGSACRFHHPRDRTVTRPLLSPIGLPLRPYD 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00049 343 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Pral4676g00049 343 Gene3D - 124 174 - -
Pral4676g00049 343 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pral4676g00049 343 Gene3D - 48 123 - -
Pral4676g00049 343 Gene3D - 290 332 - -
Pral4676g00049 343 PANTHER PROTEIN PHOSPHATASE RELATED 19 342 - -
Pral4676g00049 343 MobiDBLite consensus disorder prediction 10 24 - -
Pral4676g00049 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Pral4676g00049 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Pral4676g00049 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Pral4676g00049 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Pral4676g00049 343 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Pral4676g00049 343 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Pral4676g00049 343 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Pral4676g00049 343 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Pral4676g00049 343 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pral4676g00049 343 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Pral4676g00049 343 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Pral4676g00049 343 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pral4676g00049 343 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Pral4676g00049 343 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Pral4676g00049 343 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00049 Pral-Chr4676 307425 310753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00049 1 341 C2H2 Transcription Factor Family AT5G18550 50.696 1.83e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4676g00049 zf-CCCH 3.9e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4676g00049 - - lja:Lj5g3v1665190.1 624.394