Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00048 ATGGAGCTGTACGGTCGGAACCCGGCTAGGAATGGGTCACAACCGGGTAATCAATCCGAATGGCGCCCATCTGGCGGCGAAACTGGGCTTGAAGAGTCGATGTGGCAGTTAACCATCGGCGGCGGTGAATCTTACCCGGAGCGACCCGGCGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTGGCAGGTGCCGTTACAATCATCCTCGTGATCGCGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGATTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAGCCAAGCTCCTCTAAATATTTATGGATACCCGTTACGCCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCATAACTTGTAAATTCCATCATCCTCATCCAGCTGGCACGTCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTTGCTGAACAGTTTGGGGGGGCATCCAGCAGTTTGAGAGTGCCTAGGCCTTCAATATTGCCTGGTTCATATATGCAAGGGGCTTATGGTCCTGTCCTCCTTTCTCCAGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTACACGGCACCTCTGAGTCCTGTGTTATCTCCTGGTGCTCAATCGGGTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCCGTTCCATCAACTACTGGCCTTTCAGGCAGTGGCCTGAATGAACCGATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATCAGCATGTCGATTTCATCATCCCAGGGACCGGACCGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTGCGTCCGAAAACAGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCACTGCAAGTTTGGCTCCACTTGCAAATATGA 1098 0.5073 MELYGRNPARNGSQPGNQSEWRPSGGETGLEESMWQLTIGGGESYPERPGVPNCVYYMRTGFCGYGGRCRYNHPRDRAAVAAAVRATGDYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPHPAGTSMPASAPQFYQQVQSPTVPLAEQFGGASSSLRVPRPSILPGSYMQGAYGPVLLSPGVVPFPGWSPYTAPLSPVLSPGAQSGVGATSLYGVTQLSSSTSAFARPYTPVPSTTGLSGSGLNEPIFPERPGEPECQYYLRTGDCKYGSACRFHHPRDRTVTRPLLSPIGLPLRPKTGGATLCFLLTKRALQVWLHLQI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00048 365 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Pral4676g00048 365 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pral4676g00048 365 Gene3D - 124 174 - -
Pral4676g00048 365 MobiDBLite consensus disorder prediction 10 24 - -
Pral4676g00048 365 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Pral4676g00048 365 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Pral4676g00048 365 PANTHER PROTEIN PHOSPHATASE RELATED 19 342 - -
Pral4676g00048 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Pral4676g00048 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Pral4676g00048 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Pral4676g00048 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Pral4676g00048 365 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Pral4676g00048 365 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pral4676g00048 365 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Pral4676g00048 365 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pral4676g00048 365 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Pral4676g00048 365 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Pral4676g00048 365 MobiDBLite consensus disorder prediction 1 28 - -
Pral4676g00048 365 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Pral4676g00048 365 Gene3D - 292 350 - -
Pral4676g00048 365 Gene3D - 47 123 - -
Pral4676g00048 365 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00048 Pral-Chr4676 305997 310753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00048 1 357 C2H2 Transcription Factor Family AT5G18550 49.333 1.05e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4676g00048 zf-CCCH 4.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4676g00048 - - lja:Lj5g3v1665190.3 624.394