Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00046 ATGGAGTTGTACGGTCGGAACCCGGTTAGGAATGGGTCGCAAGCGGGCAGTCAATCTGAATGGCGCACATCAGGTGGCGAACCTGGGCTTGAAGAATCGATGTGGCACTTAACTATTGGCGGCACCGAATCTTACCCGGAGCGACCCGGCGTACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCAGCAGCTGTGAGAGCTACCGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGATCATTAAGCCAAGCTTCTCTAAATATTTATGGATACCCTTTACGCCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCATAACTTGTAAATTCCATCATCCCCATCCAGCTGGCACATCAATGCCGGCTTCTGCATCTCAGTTTTATCAACAGGTGCAGTCTCCTACGGTCCCTCTGGCTGAACAGTATGGGGGCGCATCCAACAATTTGAGAGTGGCCAGGCCCTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCATGTCCTCCTTTCTCCAGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCACCTCTGAGTCCTGTGTTATCTCCTGGTGCTCAATCTGGTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGGCCATATACTCCTCTTCCATCAACTACTGGCCTTTCAGGCAGTGGCCTGAATGAACCGATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATCAGCATGTCGATTTCATCATCCCAGGGACCGGACTGTGACCCGGCCACATCTCAGCCCCATTGGTCTTCCTTTGCGTCCGCTATACAATTAA 1035 0.5005 MELYGRNPVRNGSQAGSQSEWRTSGGEPGLEESMWHLTIGGTESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQASLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPHPAGTSMPASASQFYQQVQSPTVPLAEQYGGASNNLRVARPSILPGSYVQGAYGHVLLSPGVVPFPGWSPYTAPLSPVLSPGAQSGVGATSLYGVTQLSSSTSAFARPYTPLPSTTGLSGSGLNEPIFPERPGEPECQYYLRTGDCKYGSACRFHHPRDRTVTRPHLSPIGLPLRPLYN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00046 344 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Pral4676g00046 344 Gene3D - 47 126 - -
Pral4676g00046 344 Gene3D - 291 333 - -
Pral4676g00046 344 MobiDBLite consensus disorder prediction 1 29 - -
Pral4676g00046 344 MobiDBLite consensus disorder prediction 10 24 - -
Pral4676g00046 344 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Pral4676g00046 344 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Pral4676g00046 344 PANTHER PROTEIN PHOSPHATASE RELATED 25 341 - -
Pral4676g00046 344 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pral4676g00046 344 FunFam Zinc finger nuclease 2 47 124 - -
Pral4676g00046 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Pral4676g00046 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Pral4676g00046 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Pral4676g00046 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Pral4676g00046 344 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Pral4676g00046 344 Gene3D - 127 176 - -
Pral4676g00046 344 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Pral4676g00046 344 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pral4676g00046 344 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Pral4676g00046 344 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Pral4676g00046 344 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pral4676g00046 344 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Pral4676g00046 344 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00046 Pral-Chr4676 291488 296161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00046 1 341 C2H2 Transcription Factor Family AT5G18550 51.532 2.90e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4676g00046 zf-CCCH 3.9e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4676g00046 - - lja:Lj5g3v1665190.3 607.446