Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00032 ATGGAAGACCCTACAACGCAAAACACAGAGCGCTTTGGAATTTTGCAGTATGGATGCGAGCACTACAAGAGAAGGTGCAAAATTCGAGCTCCATGCTGTGACCAGATCTTCCCATGTCGCCACTGCCACAACGACGCCATGAGCTCGCTTGACAACCCCAAAGAGCGCCATGAGCTGGTCAGGCGTGATGTTAAGCAGGTTATATGTTCAGTCTGTGATGCTGAGCAGGAGGTTGCTAAAGTGTGTTCTAATTGTGGTGTCAACATGGGGGAATATTATTGCGAGATTTGCAAATTCTATGACGATGATACAGATAAAGGGCAATTCCATTGCGAGGAATGTGGTATTTGCAGGGTTGGTGGTCGTGATAACTTCTTTCATTGTCAGAAATGCGGATCGTGCTATTCAGTGGAACTGAAAGGCAAGCACTTTTGTGTAGAGAACTCAATGAAGAGCCAGTGCCCTGTCTGCTATGAGTATCTGTTCGATTCAATTCAAGGCACCACAGTTATGAAGTGCGGACATACAATGCATATGGAATGCTTTCGGGAGATGGCAGCCCAAAATCAGTACCGTTGTCCTGTCTGCTTGAAGTCAGCATTCAATATGTCAGAGAATTGGAGACATCTGGATCTTGAGATTGAAGCTGTTCCGATGCCTCAGGAGTACAAGACTGAGGTCTCGATTCTGTGCAATGACTGCAATACCACCAGCGAAGTGTCGTTTCACGTCTTAGGCCACAAGTGCAGACGGTGCGGTTCGTACAACACCCGTAGGATTTCATCACCACCTGAAGATCAATGA 804 0.4677 MEDPTTQNTERFGILQYGCEHYKRRCKIRAPCCDQIFPCRHCHNDAMSSLDNPKERHELVRRDVKQVICSVCDAEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKGQFHCEECGICRVGGRDNFFHCQKCGSCYSVELKGKHFCVENSMKSQCPVCYEYLFDSIQGTTVMKCGHTMHMECFREMAAQNQYRCPVCLKSAFNMSENWRHLDLEIEAVPMPQEYKTEVSILCNDCNTTSEVSFHVLGHKCRRCGSYNTRRISSPPEDQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00032 267 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Pral4676g00032 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 267 - -
Pral4676g00032 267 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Pral4676g00032 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 216 IPR013083 -
Pral4676g00032 267 Pfam Zinc-ribbon 201 258 IPR039512 -
Pral4676g00032 267 Pfam Ring finger domain 153 196 IPR001841 -
Pral4676g00032 267 SUPERFAMILY RING/U-box 153 200 - -
Pral4676g00032 267 SMART ring_2 154 196 IPR001841 -
Pral4676g00032 267 Gene3D - 224 264 - -
Pral4676g00032 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 262 - -
Pral4676g00032 267 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Pral4676g00032 267 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Pral4676g00032 267 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Pral4676g00032 267 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00032 Pral-Chr4676 242925 246246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00032 17 265 C2H2 Transcription Factor Family AT3G18290 42.085 1.72e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4676g00032 K10144 - qsa:O6P43_007118 484.567