Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00031 ATGGGTGATTCTCCGAAGCACCCCAATCTGCCGGATAAAGATCGGGCGCCAAAAGCTCAAAGGCCATGCGACTACTGTGGCGACTCCACTGGTATTCTCTATTGTCGAGCTGATTCTGCGAAGCTCTGTTTCTCTTGTGATCGTGAAGTTCACTCTACCAACCAACTCTTCTCGAAGCACACTCGAGCTCTGCTCTGTGATGCCTGCAACGATTCGCCGGCCACAATACTCTGTTCTACCGAAAGCTCCGTTTTCTGCCAGAATTGTGATTGGGAACGGCACAACCTTTCGTTGTCTTTGGTGCACGATAGGAGGCCACTCGAGGGCTTCACTGGGTGTCCTTCCGTGAGTGAGTTGCTATCGATTCTGGGTTTTGAAGATTTGGGCAAGAAAGCCCTGTTTTCGACTGAGGATAGTGGAGTGTGTGACGTCGGTAGTGGCGATGGATTTGTGGGATCTGAGCTTGAGGAGGGCCTTTCGGACTTGTTCGTGTGGGATGCTCCTGCTGTTGTTAGCCTTGACGATTTGATAAGTTCTACAAGCTCGTCTCACAATTATCAGGCCATGGAGGTTCCTCCTCTGCCTAAGAACCGTAAGGCTGCTTGTGGGCAACACAAGGAAGAAATCATTAGTCAGCTTCGTGAGCTAGCAAAATCGGAGCCCAGCTTGAATTTTGGAGATGTAGATACTGAACGAGTGAGCTCCAGGCACCCCATAGTCCCTGAACAGTATTTAAAGTCGGCAAGCTTGTCCACAGGTTTTGAACATGAATTCGAGGCTGATATTTTTCCTTCGTACGAGACAAATGTTTTAGAGGGGCATAGAGATAGTGAGACTGCAAATCAAGTTGTTCCTCCTAATACATCGTTGTATAAAGAAGAAGCTCTTGACTTCCATTCAGTTTCCACTGTCTGTGGGAATCATACCTATCTTAGCAGTGGAGGACAACTGAACTCTTTTAACTCTGAAAACTCATCGACGACCCCAAAAGTTGCTTCGTATGAGCTGACAAGTCAAGAAAGAGACTCTGCCTTATTACGTTACAAGGAGAAGAAGAGAACAAGAAGATATGACAGGCACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGACAAGAATCAAGGGTCGTTTTGCTAAGATAGAACACTGA 1158 0.4698 MGDSPKHPNLPDKDRAPKAQRPCDYCGDSTGILYCRADSAKLCFSCDREVHSTNQLFSKHTRALLCDACNDSPATILCSTESSVFCQNCDWERHNLSLSLVHDRRPLEGFTGCPSVSELLSILGFEDLGKKALFSTEDSGVCDVGSGDGFVGSELEEGLSDLFVWDAPAVVSLDDLISSTSSSHNYQAMEVPPLPKNRKAACGQHKEEIISQLRELAKSEPSLNFGDVDTERVSSRHPIVPEQYLKSASLSTGFEHEFEADIFPSYETNVLEGHRDSETANQVVPPNTSLYKEEALDFHSVSTVCGNHTYLSSGGQLNSFNSENSSTTPKVASYELTSQERDSALLRYKEKKRTRRYDRHIRYESRKVRAESRTRIKGRFAKIEH 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00031 385 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Pral4676g00031 385 MobiDBLite consensus disorder prediction 1 20 - -
Pral4676g00031 385 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Pral4676g00031 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 382 - -
Pral4676g00031 385 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Pral4676g00031 385 Pfam CCT motif 341 382 IPR010402 GO:0005515
Pral4676g00031 385 CDD Bbox1_BBX-like 22 65 - -
Pral4676g00031 385 SMART bboxneu5 66 107 IPR000315 GO:0008270
Pral4676g00031 385 SMART bboxneu5 18 65 IPR000315 GO:0008270
Pral4676g00031 385 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Pral4676g00031 385 Pfam B-box zinc finger 64 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00031 Pral-Chr4676 235894 237962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00031 21 356 C2C2-CO-like Transcription Factor Family AT2G47890 41.813 4.03e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral4676g00031 CCT 3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4676g00031 - - pcin:129296118 644.039