Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00020 ATGAGGCGCCAGAGGAGAATGAACGGTATAGCTGCTGCGAACAAAGGGTCTCCACCAGCGAATAACTCCCCAAAAAATGGTGACGGAACTTCGACATTTAGCTATGGCGGCCTCTCCCGGGAAGGTGAGAAAGATGTTTTGAATGATTCACTGTGGCAAGCATGCGCCGGCGCTTCTGTCATTGTTCCTCGCACTGGGGACTTGGTCTACTACTTTCCTCAAGGCCACCTGGAACAGGTGGCTGACTTTACTCGGCAAGATGGTCACATGGAACTTCCTGCTAGTGATTTGCCTTATAAAATCCTTTGCAGAGTCATGGGTGTTCAACTAAAGGCTGAAGCCAACACAGACGAGGTTTTCGCTCAAATTACCTTAATTCCTGAGTCAAAGCAAGTTAGTTCAGATGATAAAGAGTCTCGACTAAGGCCCAGAACTACTTCCAGATGCTTTAGTAAGACGCTCACCCTATCAGATACAGGTGCACATGGTGGATTCTCCATTCCTAAGAAACTTGCCGAGGAATGCTTCCCACCTCTGGATATGTCTCAGCAACCACCAGGACAAGAGCTTGTTGCGAAGGACTTGCATGGTGTGGTATGGAACTTCCGCCATACCTATCGGGGTCAGCCGAAACGACACCTGCTTACGGGTGGCTGGAGTTCATTCCTGCATTCAAAAAAGCTTGAGCCCCGAGATACATGCATTTTTCTTTGCGGAGAAAATGGAGAACTTGGTATTGGGATCCGTCGAGCACTTAAACAACACAATAAAGCATCCCCATCCACATGCGTGATATCTGGCCATAGCATGCAACTCGGAATATTGGCCACTGCTTCTTATGCTGTTGCTACAGGATCCATGTTTACTGTCTACTACCGTCCTTGGACTTGTCCCTCTGAATTCATTATTCCACTGGATCAGTACATGAAGTCAACTAAAATGAAATATTCATGTGGAATGAGGATACAAATGCAGTTTGAAGCCGAAGAATCTACAAAGAGATATGCAGGAACCATAATAGGTATTGACGATATTGATGGCATGAGGTGGCCTGGTTCAGAATGGAGATGTCTCAAGGTGAAATGGGATGCCAAGCTTGATACAGATATGCGTCCTGAAATGGTTTGTCCTTGGAACATTGAGCCCCTGGAATCTTCCGGGAAGAATACCGTTAACCTACCGCAACCAAAGAGGTCACGTTTACTTGGCCCATCGATGTCTGGATTATGCGATTTTACCAAGGATGGCATCGATCTGAACTCAGCCAACAATGCATCTCAGAGATGTGAAAGGGACTTACAAGGTCAAGATTACAAAGATGCAGGCTTCCCACACTATGACTCACAGTACAGGACGAAGAATCAACCGCACTTTCAACTGCGAATCCCTCCTTGCCATTCTCTTGGTGGCTCAGCACCATTTCCAGATGATGACATTTCAATTTCAAGTCACCCCAAACAGCCCCTAATCCCAACCACTTATGGCGCATGTAATAATGTGCCCGTCGCCAGGTACCTTTCACCCTCAAATGTGAATTCCAGTGACTCTGAATCCCAGGGGTGGCGGGCTTCTGAATCGAAGGATGAGAATGATAATAAAATTGAGCACAAGCTATTCGGGATAAGCTTAAACCACCCGGAGCTCCCTTCACCACAAGTTGCTGCTTCTAGCAGTACTTCAACCCTTCATGTTCCTCCAATGTCTCAGTCATGCGTTTCTGCGACTATCCCGGTTTCCAAACCATCAGAGGGTATTTCAGGTGTTACGTCGCAGAAAAAATGCAAGAAATGTAGCTCTGTTAATAGCAGGACTTGCACCAAGGTGCTTAAGCGTGGAAGTGCACTTGGTAGATCGATTGACCTCTCACATATTACTGGATACGATGACCTCATTTCTGAACTGGACCTGATGTTTGATTTCAAAGGAAGCTTAATAGATGGAAGCAGCGGATGGCATGTTGTTCCCATGGATGATGACGGGGATATGATGCTGTTTGGAGATTTCCCATGGCAGGATTTCCAGTCCATGGTGCAAAAGATGATCATTTGTCCAAAGGAGGACTCCAACAACCGGAGTGCTATTGCTAGCACAGCAGACTCAACAACCTTGTAA 2112 0.465 MRRQRRMNGIAAANKGSPPANNSPKNGDGTSTFSYGGLSREGEKDVLNDSLWQACAGASVIVPRTGDLVYYFPQGHLEQVADFTRQDGHMELPASDLPYKILCRVMGVQLKAEANTDEVFAQITLIPESKQVSSDDKESRLRPRTTSRCFSKTLTLSDTGAHGGFSIPKKLAEECFPPLDMSQQPPGQELVAKDLHGVVWNFRHTYRGQPKRHLLTGGWSSFLHSKKLEPRDTCIFLCGENGELGIGIRRALKQHNKASPSTCVISGHSMQLGILATASYAVATGSMFTVYYRPWTCPSEFIIPLDQYMKSTKMKYSCGMRIQMQFEAEESTKRYAGTIIGIDDIDGMRWPGSEWRCLKVKWDAKLDTDMRPEMVCPWNIEPLESSGKNTVNLPQPKRSRLLGPSMSGLCDFTKDGIDLNSANNASQRCERDLQGQDYKDAGFPHYDSQYRTKNQPHFQLRIPPCHSLGGSAPFPDDDISISSHPKQPLIPTTYGACNNVPVARYLSPSNVNSSDSESQGWRASESKDENDNKIEHKLFGISLNHPELPSPQVAASSSTSTLHVPPMSQSCVSATIPVSKPSEGISGVTSQKKCKKCSSVNSRTCTKVLKRGSALGRSIDLSHITGYDDLISELDLMFDFKGSLIDGSSGWHVVPMDDDGDMMLFGDFPWQDFQSMVQKMIICPKEDSNNRSAIASTADSTTL 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00020 703 MobiDBLite consensus disorder prediction 1 37 - -
Pral4676g00020 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4676g00020 703 SUPERFAMILY DNA-binding pseudobarrel domain 145 278 IPR015300 -
Pral4676g00020 703 ProSiteProfiles PB1 domain profile. 603 685 IPR000270 GO:0005515
Pral4676g00020 703 Pfam Auxin response factor 278 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4676g00020 703 Gene3D - 148 252 IPR015300 -
Pral4676g00020 703 Gene3D - 315 389 - -
Pral4676g00020 703 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Pral4676g00020 703 MobiDBLite consensus disorder prediction 508 530 - -
Pral4676g00020 703 Gene3D - 598 692 - -
Pral4676g00020 703 MobiDBLite consensus disorder prediction 15 37 - -
Pral4676g00020 703 FunFam Auxin response factor 315 387 - -
Pral4676g00020 703 FunFam Auxin response factor 148 252 - -
Pral4676g00020 703 Pfam AUX/IAA family 594 683 IPR033389 -
Pral4676g00020 703 Pfam B3 DNA binding domain 150 250 IPR003340 GO:0003677
Pral4676g00020 703 CDD B3_DNA 148 250 IPR003340 GO:0003677
Pral4676g00020 703 SUPERFAMILY CAD & PB1 domains 602 679 - -
Pral4676g00020 703 SMART B3_2 150 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00020 Pral-Chr4676 142012 148571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00020 593 687 B3 DNA Binding Superfamily AT5G62000 47.368 4.07e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4676g00020 AUX_IAA 2.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4676g00020 - - pcin:129286310 1217.6