Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4676g00013 ATGGCTGAGGGGAAGGAGGAGAGTAAATCTAGCGAGGAGAGTGTCAAATTGTTCGTGGGTCAAGTGCCCAAGCATATGACGGAGGCCGAGCTTCTTACAATGTTCAAGGAGTTCGCTCTGGTGGACGAGGTCAACATCATCAAGGACAAGGTCACTCGGTCCTCTCGAGGTTGTTGCTTCGTGATTTGTCCGTCGAGGCAAGAGGCAGACAAGGCGGTCAATGCGTGTCATAACAAGAAGACGCTACCTGGGGCATCGAGTCCGTTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGACTAGAACACAAACTTTTTATTGGCATGCTTCCAAAGAATGTTTCTGAGGCTGAAGTCTCCGCTCTTTTCTCCAATTATGGAACCATAAAGGATTTACAGATTTTGAGAGGTTCTCAGCAAACAAGTAAAGGCTGTGCGTTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTGGACGCAATCAATGGAAAATACAAGATGGAGGGTTCAAGTGTTCCTTTGGTGGTCAAATGGGCAGATACAGAAAAGGAAAGACAAGCTCGGAGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTGCCACATAATGACTCTCAGCATCAGTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCACAATACAATGGATATGGCTATCAGGCTGCTGGGGGTTATGGGCTCATGCCATACCGCTTGCCACCATTGCAGAATCAACCTGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGGGACCTGAACTTGGTCCCAATATGAACCCTAGAAATTATTCTGTGCCTCCTGGAAGTTACTATGGTTCTTATCCTGCAGTTCCAGGTATGCAGCATCCAATGGCATATCCTGGAGGAGTGATAAGTCCTAGGCCTGTGAGTAGCTCTCCCGGTTCGGTTTCACCAGCAGGTGGAAGTAGCAACTCTGCCACATCTTCAGGTGCCAATAAGAATTCTAGTCAGGTTGAAGGACCACCTGGTGCCAATCTCTTTATTTATCACATACCTCCTGAATATGGAGATCAAGAGCTGGCAAATGCGTTTCAGCCTTTTGGTAGGGTTTTGAGTGCCAAAGTGTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGGTTTGTAAGTTATGACTCTCCAGAAGCAGCACAAGCCGCCATTAATATGATGAATGGATTTCAGTTAAGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGACAACAAGCAGAATAAGCCTTACTGA 1293 0.4586 MAEGKEESKSSEESVKLFVGQVPKHMTEAELLTMFKEFALVDEVNIIKDKVTRSSRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALDAINGKYKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHNDSQHQSLFGALPMGYVPQYNGYGYQAAGGYGLMPYRLPPLQNQPGYHNMMPHMNQGNALGPELGPNMNPRNYSVPPGSYYGSYPAVPGMQHPMAYPGGVISPRPVSSSPGSVSPAGGSSNSATSSGANKNSSQVEGPPGANLFIYHIPPEYGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQAAINMMNGFQLSGKKLKVQLKRDNKQNKPY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4676g00013 430 CDD RRM1_2_CELF1-6_like 104 179 - -
Pral4676g00013 430 MobiDBLite consensus disorder prediction 305 340 - -
Pral4676g00013 430 CDD RRM3_CELF1-6 347 419 - -
Pral4676g00013 430 Gene3D - 101 192 IPR012677 -
Pral4676g00013 430 MobiDBLite consensus disorder prediction 185 208 - -
Pral4676g00013 430 FunFam RNA-binding protein BRN1 2 99 - -
Pral4676g00013 430 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Pral4676g00013 430 Gene3D - 2 100 IPR012677 -
Pral4676g00013 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pral4676g00013 430 FunFam RNA-binding protein BRN1 313 422 - -
Pral4676g00013 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Pral4676g00013 430 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pral4676g00013 430 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pral4676g00013 430 SMART rrm1_1 346 419 IPR000504 GO:0003723
Pral4676g00013 430 CDD RRM1_2_CELF1-6_like 16 92 - -
Pral4676g00013 430 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Pral4676g00013 430 PANTHER RNA BINDING PROTEIN 14 424 - -
Pral4676g00013 430 MobiDBLite consensus disorder prediction 309 340 - -
Pral4676g00013 430 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Pral4676g00013 430 Gene3D - 313 422 IPR012677 -
Pral4676g00013 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Pral4676g00013 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pral4676g00013 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Pral4676g00013 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pral4676g00013 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Pral4676g00013 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pral4676g00013 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pral4676g00013 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pral4676g00013 430 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4676g00013 Pral-Chr4676 107114 112064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4676g00013 344 428 Eukaryotic Initiation Factors Gene Family AT2G23350 32.941 3.21e-07 50.8