Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4674g00033 ATGGACACTCAAGAAGACCCTCCTGAAACACCAGCCAAAAGGCACAAGTGCTCAGCCTGCTATAGGCAATATAAGAGAAAGGAACATCTCATTGAGCACATGAAAATTTCATACCACTCAGTCCATCAGCCTAAATGCAGGGTCTGTCAAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACACCTTACCGGTCCATTGCCGAAAGGAAATTGTTCCAAGCACTTCTCTGAACATGGTTGCCAACTTTGCTTAAAATTATTTGATAGCCCCACAGCTCTTATCGAGCATAAAGAGATGTGTTACCTATCTGCACCCACTCCTCTGGGAACAGAGGCATTGACCTATATTAGATCCCAAATGCATCGTCCAGATTCTCCTGATGAAAACCTCACTGGAAGGCACCCTGGAGCAATCGCAATTGATTGCGAAATGGTTGGTGGTGGAAGTGATGGATCATTAGATCTTTGTGCTAGAGTATGCATGGTCGATGAAGATGAGAATTTAATTTTTCACACCTATGTGCAGCCTCAAATCCCAGTTACTAACTATAGATATGATATAACTGGGTTGACAGAAGAGCATCTTAGAGATGCGATGCCACTTAAGGAAGTTCAAGACAAGGTATTGCAAATTCTGTACAATGGAGAATCAATTGGCAAAGTTAGATTGGATGGAGGAAAGGCCAAGCTTCTTGTGGGGCATGACCTAGAACATGATTTGGACTGCCTGAAATTGAATTATCCTGATCATATGTTGAGGGACACTGCAAAGTATCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTTAAGTACCTTACATTAACATATTTAGGTTATGACATCCAGACAGGCACACATGACCCTTATGAAGACTGTGTTTCCGCGATGAGGTTGTACAAGAGAATTCGAGGCCAAGTTCATATGGAGGAAAACTCCAGAACATTTACTTCAAGTAACGTCACTGCCATTTCTGATTATTGGAAATCCAAGGAACTTGAGAACTCTACACCAGATGAACTCTTTGCCATGTCAAAGTCAGACTATAGATGCTGGTGTTTGGATTTGATGTAG 1080 0.4204 MDTQEDPPETPAKRHKCSACYRQYKRKEHLIEHMKISYHSVHQPKCRVCQKHCKSFESLREHLTGPLPKGNCSKHFSEHGCQLCLKLFDSPTALIEHKEMCYLSAPTPLGTEALTYIRSQMHRPDSPDENLTGRHPGAIAIDCEMVGGGSDGSLDLCARVCMVDEDENLIFHTYVQPQIPVTNYRYDITGLTEEHLRDAMPLKEVQDKVLQILYNGESIGKVRLDGGKAKLLVGHDLEHDLDCLKLNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTLTYLGYDIQTGTHDPYEDCVSAMRLYKRIRGQVHMEENSRTFTSSNVTAISDYWKSKELENSTPDELFAMSKSDYRCWCLDLM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4674g00033 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Pral4674g00033 359 Pfam Exonuclease 139 302 IPR013520 -
Pral4674g00033 359 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Pral4674g00033 359 Gene3D - 135 322 IPR036397 GO:0003676
Pral4674g00033 359 Gene3D Classic Zinc Finger 2 65 - -
Pral4674g00033 359 SUPERFAMILY Ribonuclease H-like 139 306 IPR012337 -
Pral4674g00033 359 SMART exoiiiendus 137 311 IPR013520 -
Pral4674g00033 359 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Pral4674g00033 359 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 317 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4674g00033 Pral-Chr4674 199445 204064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4674g00033 1 359 C2H2 Transcription Factor Family AT2G48100 54.821 3.90e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4674g00033 K18327 - gmx:100805841 592.038