Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4674g00016 ATGAATAGTGAAGAGACGCGCAGAGATTTAAAAAGAAAGTTCCCGCATGTGGACCGGTTGCAAGAGCATGGATCATATGATAGACTTCCTCCTGGTTGGTTGGACTGCCCGGCGTATGGTCAAGATATAGGATGCATAATCCCTTCAAAAGTTCCGCTCGGTGAATCCTTTGATGATATCGTTCCAAGTCAAAAATATTCTCCCAAGCAAGCAATTTTTCAGCAAAGACAATTAGGTAGAGAAGTTGGTCTAGTAATTGATTTGACAAATACTACTCGTTACTACTCAATATCAGATTGGACCAAAGAAAGGATTCGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCCGTGCCTGATGATGAATCTGTAAACAGATTTTGCAATGAAGTCGTGGATTTTCTCTCCCAAAGAGCGAACAGAAACAAATATATACTTGTGCATTGCACTCATGGGCACAATCGCACTGGTTATATGATTGTTCATTTTCTTGTGCGTACAGAATCAATTTCAGTCACTGAGGCTATAAATAAATTTGCGATGGCACGTCACCCTGGAATTTACAAGCAGGATTATATTGATGCCTTGTACATGTTTTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTAAAACTCCAGAGTGGAAAAGACTTTCTGATCCACAGTTTCCTGGTGCAGTTGACCCACCTGTAGAAAGTATTGGAGGTGTTCCTTTGCATGAGAATATCATAAGGAATGAAGTATTGACAAACGATGATGTTTTGGGAGATCCTGTACCTTCAAGTCAACTGCATTCAATGCGAGTAGAGTGTTACCAACTACTTAAGCTGGGCAAAGGGGGAAGGGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATCTACAACTCTTAAGACAGCGGTATTACTATGCCACGTGGAAGGCTGATGGGACCCGCTATATGATGTTGATCACCTGGGATGGATGTTATTTGATTGACAGAAAATTTCATTTTCGAAAGGTTCATATGCGTTTTCCCTGCAGATATTTGAATGGGGGTACACCTGAAAGGAATCACCACTACACGTTACTTGATGGCGAGATGATAATTGACATGGATCCACATACACAAAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCTATTAATCGAGTTTCCGTGACTGAGCTGCCTTTCTATGAACGTTGGAAATTGCTAGAGAAAGAAGTGATTGAGCCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTATAAATCCTTATTATCGATATGACTTGGAGCCGTTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTTTCAAAGCTTCTCAATAAATTCATTCCGCAACTGTCCCATCCATCAGATGGTCTTGTGTTCCAGGGCTGGGATGATCCTTACGTCCCTCGAACACACGAAGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGACCAGCTGGTCGTTGCCTGCTCTTTCTTCATGAACGTGGAAAGAAGAAGTTGATGGAAGGGTGTAGGGTGTTTTTCAAAGATGTATCAGATACATCTTCTTATTCAGGGAAAATCATTGAATGCTACTGGGATCCTGAGGAGAATCATTGGGTCTGCATGCGGACAAGGACTGACAAATCAACTCCAAATGAGATCAATACCTATAGAAAGGTAATGCGAAGCATAAGGGATAACATCACAGAAGAAGTTGTATTGAATGAGATAAATGAGATCATACGCCTTCCCTTGTATGCTGACAGAATACAAAGGGATATAAAGGCTCACCAACAGATAGTCTCTGCAAGGCGAAGGTGA 1866 0.4169 MNSEETRRDLKRKFPHVDRLQEHGSYDRLPPGWLDCPAYGQDIGCIIPSKVPLGESFDDIVPSQKYSPKQAIFQQRQLGREVGLVIDLTNTTRYYSISDWTKERIRHVKIRCKGRDSVPDDESVNRFCNEVVDFLSQRANRNKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFAMARHPGIYKQDYIDALYMFYHERKPEEVVCPKTPEWKRLSDPQFPGAVDPPVESIGGVPLHENIIRNEVLTNDDVLGDPVPSSQLHSMRVECYQLLKLGKGGRGSLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITWDGCYLIDRKFHFRKVHMRFPCRYLNGGTPERNHHYTLLDGEMIIDMDPHTQKQERRYLIYDLMAINRVSVTELPFYERWKLLEKEVIEPRNMEREALCKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLNKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGPAGRCLLFLHERGKKKLMEGCRVFFKDVSDTSSYSGKIIECYWDPEENHWVCMRTRTDKSTPNEINTYRKVMRSIRDNITEEVVLNEINEIIRLPLYADRIQRDIKAHQQIVSARRR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4674g00016 621 Gene3D - 528 598 IPR012340 -
Pral4674g00016 621 PANTHER MRNA-CAPPING ENZYME 27 602 - -
Pral4674g00016 621 SUPERFAMILY Nucleic acid-binding proteins 493 606 IPR012340 -
Pral4674g00016 621 SMART dsp_5 62 202 IPR020422 GO:0006470|GO:0008138
Pral4674g00016 621 FunFam mRNA capping enzyme family protein 489 598 - -
Pral4674g00016 621 CDD RNA_5'-triphosphatase 32 198 - -
Pral4674g00016 621 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 29 217 IPR029021 -
Pral4674g00016 621 FunFam mRNA capping enzyme family protein 25 232 - -
Pral4674g00016 621 CDD Adenylation_mRNA_capping 263 491 IPR001339 GO:0004484|GO:0005524|GO:0006370
Pral4674g00016 621 Gene3D DNA ligase/mRNA capping enzyme 251 490 - -
Pral4674g00016 621 Pfam mRNA capping enzyme, C-terminal domain 528 588 IPR013846 -
Pral4674g00016 621 Pfam Dual specificity phosphatase, catalytic domain 79 200 IPR000340 GO:0008138|GO:0016311
Pral4674g00016 621 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 255 491 - -
Pral4674g00016 621 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 194 IPR000387 GO:0016311|GO:0016791
Pral4674g00016 621 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Pral4674g00016 621 FunFam mRNA capping enzyme, putative 251 488 - -
Pral4674g00016 621 PIRSF mRNA_capping_HCE 17 621 IPR017074 GO:0004484|GO:0006370|GO:0140818
Pral4674g00016 621 Gene3D Protein tyrosine phosphatase superfamily 4 222 IPR029021 -
Pral4674g00016 621 Pfam mRNA capping enzyme, catalytic domain 292 490 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4674g00016 Pral-Chr4674 96727 104376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4674g00016 25 621 Protein tyrosine phosphatase (PTP) family AT3G09100 63.756 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4674g00016 K13917 - gmx:100778292 1023.08