Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4671g00016 ATGGCTTTCTTCTCAGCAAATTTCATATTACAGAACCCTCACCAAGAAGACCACCATCAGCCTCCACCGTCACTCAACTCAATTCTGCCTCAAGATTATCATGGAGGAGCGTCGCTTCTAGGGAAGAGATCTATGACATTTTCAGGACTTGAACTTGGTGGTGAAGAAGCAAATAATGGTGATGAAGACTTGTCTGATGATGGATCTCAGGCTGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAAACACTTGAGAAGAGCTTTGAGCTTGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTGCAGCCTAGGCAGATTGCTATATGGTTCCAGAACAGAAGAGCTAGATGGAAGACAAAGCAGTTGGAGAAAGATTACGATGTTCTCAAAAGGCAATATGAAGCTATCAAAGCAGATAATGATGCCCTTCAAGCTCAAAACCAGCAACTTCAGGCGGAGATATTGGCACTGAAAAGCAGAGAAGTGCCAACTGAATCTATCAACCTCAATAAGGAGACTGAGGGATCTTGTAGCAATCGGAGTGAGAATAGCTCGGATATTAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTCTATCCACTCATCATCAAATTACAAGCAGACCCTTATTCCCATCATCGACATCTAATTCTGCTAGGCCTTCTTCAGGAGTGGCTCAGTTTTTCCAAACCTCTTCAAGACCAGACCTTCAATGCCAGAAGATTGATCATATGGTCAAAGAAGAGAGCTTGACCAACATGTTTTGTGGGATTGATGATCAAACAGGGTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 858 0.4382 MAFFSANFILQNPHQEDHHQPPPSLNSILPQDYHGGASLLGKRSMTFSGLELGGEEANNGDEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAIKADNDALQAQNQQLQAEILALKSREVPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHHQITSRPLFPSSTSNSARPSSGVAQFFQTSSRPDLQCQKIDHMVKEESLTNMFCGIDDQTGFWPWLEQQHFN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4671g00016 285 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Pral4671g00016 285 Gene3D - 66 135 - -
Pral4671g00016 285 MobiDBLite consensus disorder prediction 175 241 - -
Pral4671g00016 285 MobiDBLite consensus disorder prediction 12 32 - -
Pral4671g00016 285 SUPERFAMILY Homeodomain-like 65 131 IPR009057 -
Pral4671g00016 285 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Pral4671g00016 285 MobiDBLite consensus disorder prediction 51 78 - -
Pral4671g00016 285 Coils Coil 121 169 - -
Pral4671g00016 285 FunFam Homeobox-leucine zipper protein ATHB-13 66 133 - -
Pral4671g00016 285 MobiDBLite consensus disorder prediction 12 27 - -
Pral4671g00016 285 CDD homeodomain 74 130 IPR001356 GO:0003677
Pral4671g00016 285 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Pral4671g00016 285 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Pral4671g00016 285 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Pral4671g00016 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 251 IPR045224 GO:0003700
Pral4671g00016 285 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Pral4671g00016 285 SMART HOX_1 72 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4671g00016 Pral-Chr4671 114808 133978 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4671g00016 1 285 Homeobox Transcription Factor Family AT1G69780 61.616 1.31e-115 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4671g00016 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4671g00016 K09338 - gmx:100808033 449.129