Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4671g00012 ATGGAGGACACTGTAGATACTGAAGAATTTTCTTTTGACAGTACTTCAGAAAATAGATTGGGAAAGGCTTTCTCTGAAATTATTTCATACACTGCAGCTGGCAAGAGTCCCGGTCAAGCTGAATCGAATGCAAATTCCTGTGTGTCTCCTGGGTCTGGGGATAACTCAAACAATCGAAGTTCTACTGCTGAACCAATTCGAGTTAGTTTATCCAGTGCCGTAAGTTCATCCAGCCATAGTTCTTATCAAGAAGATTTTGATGCTATAGGTGATGTCTTTATCTTTGGAGAAGGTATGGGTGATGGAATCCTTGGTGGTGGTTTGCATAGACTTGGAACTTCATCTGGTTCTGAGATGGATGCATTTCTCCCCAAGGCTTTGGAATCAAAAGTAGTTCTGGATGTTCAGAGTATTGCTTGTGGTTACAAACATGCTGCTTTAGTTACCAAGCAAGGAGAGATATATAGTTGGGGGGAGGAATCAGGAGGTAGGCTAGGGCATGGCGTAGAAATGGATGTTTCTCACCCTAAACTCATTGACACTCTTAATGGCATGAACATTGAATTAGTAGCATGTGGAGAGTATCACACTTGTGCTGTCACATTTTCTGGGGATCTTTATACGTGGGGTGATGGTATTCATAATTCTGGATTACTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAGAGTAAGCGGTAACATGGAAGGTGTACATGTATCCTATGTATCTTGTGGACCTTGGCACACAGCGATTGTGACATCTTCTGGCCGGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCTAGGAGATCTTAGTAGCACAAATACTCCTAGGGAAGTAGAAACTTTGACAGGGTTGAGAACAACCAGGGTCTCCTGTGGTGTTTGGCACACTGCTGCTGTTGTTGAGGTGGCAACTGAATCTATGGAATCTTCTAGAAACTTACCTATGGGAAAACTGTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGGTGATAGCGAACCTAGATTAATTCCCCAGCGTGTTATTGCATTGGATAATCAAAATATTTGTCAAGTGGCTTGTGGTCACAGTCTCACTGTTGCTTTGACAGCCTCAGGACATGTATATACAATGGGCAGTACTGCTTATGGGCAGCTTGGCAGTCCAGCGGTTGATGGAAAATTCCCTACACGGGTTGAAGGTAAAATTGCCGGTAGTTTTATAGAATATATTGCCTGTGGTTCATATCATATTGGAGTTCTGACTTCCAAAGCAGAAGTTTACACGTGGGGAAAGGGTTCTAATGGGCAGCTAGGTCATGGAGACAATAGTCACCGAGATGCACCTACACTTGTTAAGTTTTTTAAAAATAAGCAAGCGAGGAGTGTTGTTTGTGGTTCAAACTTCACTGCTGTTATATGTCCTCATAAATGGGTATCAAGTGCTGACCAATCTGTGTGTTCTGGCTGTCACAATCCTTTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGTTCAGCATGCAGCAATAGAAAATCTACTAAAGCTTCTCTTGCTCCAAATTCAAACAGGCCATATCGTGTTTGTGATGACTGTTATTCCAAACTTAAGAAGACCACAGAATCTGTTTCCTTGACGAAAACTTTTACATTAAAAAATTTGCCTGACTCTTGGGCTGGTAAACTACAGGAAAAACTATTAAGACTTTCATCGTTTGGCTCTACTGCTCAAGCAGAAAGCAGGCACTCAAAGATCCCAGAACCACATCATAGCCATGTTTTTCCAGCTCTGAATGGCAAACTACAGTTGGGGGGATTCAGTCCTCTAAACGCATCAAATTCTCTTGCTGGAGCATTAGAGAAGCCCCTGTCAGTTTCTGTGCCCGCAAGTGGTTTGAACTCTGAAGCTTCATCTCCAGTTTCAGAAAAATTGAGCCCACGGTTGTCTTCTGAAGATGTCCATGATGATTCAAAGCACAGAAACAGCATTTTAAGCCAGGAGGTTATAAGTTTAAGGGCACAGGTTGAAGATCTTACTCTTAAATCCAAGCATCTTGAGGCTGAACTTGAGAGGACATCAAAGCAATTAAAGGAAGTGACTGCAGTAGCAGCAGAAGAAGCTGAGAAGTGTAAATCTGCTAAAGAGGTTATAAAGTCATTGACTGCTCAGTTGAAGGAAGTGGTACACAGAGTGCCACAGGGAGGTATTGCAAACTCTGGTGTAGACTTCTCTGCTGAAATCACCTCTAATGTTCTAAATCAATCTTTAAACGAGAGCCACATAACAGAGAGTATCACTGCTGAAACTGAGTCCAACAGCAATGCAGAAAATGGGATACTGCCTAGTATTTCCAAAGCACAGAGTGGAAAGTCAGAGTGGGTGGTGCAAGATGAACCAGGTGTATACATAAGTTTGTCCTCCTTGCCAGGTGGTGGTAATGAACTTAAACGCGTGCGTTTCAGTCGGAAACATTTCACAGAACAGGAAGCTGAAAAGTGGTGGGCTGAAAATGGGACCAAAGTATTGGAGCGCCACAATGTAGTTGCTACGTAG 2580 0.4271 MEDTVDTEEFSFDSTSENRLGKAFSEIISYTAAGKSPGQAESNANSCVSPGSGDNSNNRSSTAEPIRVSLSSAVSSSSHSSYQEDFDAIGDVFIFGEGMGDGILGGGLHRLGTSSGSEMDAFLPKALESKVVLDVQSIACGYKHAALVTKQGEIYSWGEESGGRLGHGVEMDVSHPKLIDTLNGMNIELVACGEYHTCAVTFSGDLYTWGDGIHNSGLLGHGNEVSHWIPKRVSGNMEGVHVSYVSCGPWHTAIVTSSGRLFTFGDGSFGALGLGDLSSTNTPREVETLTGLRTTRVSCGVWHTAAVVEVATESMESSRNLPMGKLFTWGDGDKGQLGHGDSEPRLIPQRVIALDNQNICQVACGHSLTVALTASGHVYTMGSTAYGQLGSPAVDGKFPTRVEGKIAGSFIEYIACGSYHIGVLTSKAEVYTWGKGSNGQLGHGDNSHRDAPTLVKFFKNKQARSVVCGSNFTAVICPHKWVSSADQSVCSGCHNPFGFRRKRHNCYNCGLVFCSACSNRKSTKASLAPNSNRPYRVCDDCYSKLKKTTESVSLTKTFTLKNLPDSWAGKLQEKLLRLSSFGSTAQAESRHSKIPEPHHSHVFPALNGKLQLGGFSPLNASNSLAGALEKPLSVSVPASGLNSEASSPVSEKLSPRLSSEDVHDDSKHRNSILSQEVISLRAQVEDLTLKSKHLEAELERTSKQLKEVTAVAAEEAEKCKSAKEVIKSLTAQLKEVVHRVPQGGIANSGVDFSAEITSNVLNQSLNESHITESITAETESNSNAENGILPSISKAQSGKSEWVVQDEPGVYISLSSLPGGGNELKRVRFSRKHFTEQEAEKWWAENGTKVLERHNVVAT 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4671g00012 859 Gene3D - 28 214 IPR009091 -
Pral4671g00012 859 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 484 546 IPR017455 -
Pral4671g00012 859 MobiDBLite consensus disorder prediction 638 670 - -
Pral4671g00012 859 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 138 148 IPR000408 -
Pral4671g00012 859 SUPERFAMILY FYVE/PHD zinc finger 480 555 IPR011011 -
Pral4671g00012 859 MobiDBLite consensus disorder prediction 656 670 - -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 324 375 IPR000408 -
Pral4671g00012 859 Gene3D - 215 492 IPR009091 -
Pral4671g00012 859 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 297 307 IPR000408 -
Pral4671g00012 859 MobiDBLite consensus disorder prediction 35 64 - -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 90 151 IPR000408 -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 427 IPR000408 -
Pral4671g00012 859 MobiDBLite consensus disorder prediction 34 64 - -
Pral4671g00012 859 ProSiteProfiles BRX domain profile. 800 855 IPR013591 -
Pral4671g00012 859 SUPERFAMILY RCC1/BLIP-II 90 481 IPR009091 -
Pral4671g00012 859 Coils Coil 677 732 - -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 204 258 IPR000408 -
Pral4671g00012 859 SMART fyve_4 478 547 IPR000306 GO:0046872
Pral4671g00012 859 Pfam Transcription factor regulating root and shoot growth via Pin3 799 854 IPR013591 -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 310 IPR000408 -
Pral4671g00012 859 PRINTS Chromosome condensation regulator RCC1 signature 365 383 IPR000408 -
Pral4671g00012 859 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Pral4671g00012 859 PRINTS Chromosome condensation regulator RCC1 signature 204 220 IPR000408 -
Pral4671g00012 859 PRINTS Chromosome condensation regulator RCC1 signature 423 444 IPR000408 -
Pral4671g00012 859 PRINTS Chromosome condensation regulator RCC1 signature 245 261 IPR000408 -
Pral4671g00012 859 PRINTS Chromosome condensation regulator RCC1 signature 261 275 IPR000408 -
Pral4671g00012 859 FunFam PH, RCC1 and FYVE domains-containing protein 1 61 312 - -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Pral4671g00012 859 MobiDBLite consensus disorder prediction 638 654 - -
Pral4671g00012 859 Pfam Regulator of chromosome condensation (RCC1) repeat 258 307 IPR000408 -
Pral4671g00012 859 Pfam Regulator of chromosome condensation (RCC1) repeat 429 476 IPR000408 -
Pral4671g00012 859 Pfam Regulator of chromosome condensation (RCC1) repeat 324 372 IPR000408 -
Pral4671g00012 859 Pfam Regulator of chromosome condensation (RCC1) repeat 375 422 IPR000408 -
Pral4671g00012 859 Pfam Regulator of chromosome condensation (RCC1) repeat 152 200 IPR000408 -
Pral4671g00012 859 Pfam Regulator of chromosome condensation (RCC1) repeat 203 254 IPR000408 -
Pral4671g00012 859 Pfam Transcription factor BRX N-terminal domain 714 743 IPR027988 -
Pral4671g00012 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 152 203 IPR000408 -
Pral4671g00012 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 553 IPR013083 -
Pral4671g00012 859 Pfam FYVE zinc finger 480 546 IPR000306 GO:0046872
Pral4671g00012 859 CDD FYVE_like_SF 490 542 - -
Pral4671g00012 859 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 52 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4671g00012 Pral-Chr4671 64081 70337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4671g00012 798 856 Major Intrinsic Protein MIP AT1G31880 54.237 2.31e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4671g00012 - - qsa:O6P43_025445 1189.87