Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral466g00014 ATGGAGCTACGTTCTTGGAGGCGACTTCCTACTCCTGATATCGATGATGAAGCAGCTTTGAACTCCTTTCCTGACTTAAATGAAGAACCTACTTCAAGCTTTTGCTCTTCTGATGGGTTAGGCGACAGCTCTGACTCATCTCGGCCTGGAAAGAGAAGAGGAAAGAAAAGGAGAAAACTCAGCTCTAAAATTGGAGAGTCCAGTCAGGACATAGGAGTGTTGGAGCATGGGGACGATGATGGCTCCTCAGGAGTTCAGCAGCAATCAACTGAACATGATTTGGCTAGCCTGAGAAAGAAGAAAAAAACCAAAAGACCAAGAAAAAAAACAAAACAAGTGTTGTTGTGGAATGTTTGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTTTCAGAAGATGTTGAGTTGGGTCATCAGAATGAACTAATGAATGAAACTGCTGAGGCTTCCTCTGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCCGAAATTAAGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAATCCGGCAAATGGTTTGTGAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTACAGCATTGCCTTGGATCAAAGGAACGCTTGTAATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAAGAGAGGGAAGTGTAGGGAAGAGTTCTCAGGGTATGATTTTGTAATAACTACATACTCTACTGTTGAATCAGAGTATAGGAAGCATATGATGCCTCCTAAAGAGAAGTGTCAATATTGTGGCAAATCTTTTAGCCAGACGAAGTTATCTGTTCACCAGAGATATTATTGCGGGCCTGATGCTGAAAGAACAGAAAAGCAATCGAAGCAATTCAAGAAAGAGAAAAAAGAAGTCAATATAAAGAAGAAAATTCAGAGGAACATGGGATCAGGGAATTCAGATACCAGATGCAAGGGGTCGTCACTTTTACATTCTGTCAAGTGGCAGCGGATCATTTTGGATGAGGCGCACTATATAAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCTCTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTAGGAGAGCTGTATTCTCTGATACGTTTCCTGCAAATAGTTCCTTATTCCTATTACCTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCAGCACAGTTCTGTCAGACATTTCTGTTGGTGGAATAAATTTGTAGCCACGCCAATTCAATTATATGGAACCGATGATCCCGGTAGGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGAGCTGTTGATCTCGCACTTCCACCTAGAATCGTTTCACTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATATAATGAGAGCCAGGCGCAGTTTAATACATATGTGGAATCGAATACTTTGACAAATAACTATGCTCATATATTTGACCTCCTCACCAGACTCCGGCAGGCTGTTGACCATCCGTACCTTGTGGTATATTCTCAAGCTGCATCATTAAAAGCTGGGGCTGACGTTAGCGTTGACGATGTTGAACAAATATGTGGCATTTGTCATGAGCCTGCAGAAGATCCTGTCGTTACCTCATGTGAACACATCTTTTGTAAGGGATGCTTGATAGACTTCTCTGCTTCCTTGGGGCGAGTGTCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCAAACAAGGATGTAGGGGATCAGTCTAGAAAAACAATAATAAAGGGGTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTTGAGAACTTTCAAACAAGTACTAAAATAGAGGCATTGGTATGTGACATAAGTGAGAGAGAAGAAATTCGATTTATGGTAGAAAGGGATGGCTCCGCAAAAGGGATTGTTTTTAGCCAATTCACTTCATTCTTGGATCTCATAAACTATTCCCTGCTCAAGTCTGGTGTTTCTTGTGTTCAATTGAATGGAAGCATGTCATTAGCTGCTCGGGATGCAGCCATTAAGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCATGAAAGCCGGTGGTGTTGCCCTCAATTTGACCGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCCGTGGAGCATCAAGCTCAAGATAGAATTCACCGGATAGGGCAATATAAACCAATCAGAATTGTCAGGTTTGTGATCGAAAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATATTTGAAGGGACTGTAGGCGGCTCTGCTGAGGCTCTGGGCAAACTCACGGAGGAAGACATGAGATTTCTATTTGTTACCTGA 2571 0.4173 MELRSWRRLPTPDIDDEAALNSFPDLNEEPTSSFCSSDGLGDSSDSSRPGKRRGKKRRKLSSKIGESSQDIGVLEHGDDDGSSGVQQQSTEHDLASLRKKKKTKRPRKKTKQVLLWNVWEEQHERWIDENFSEDVELGHQNELMNETAEASSDLTMPLLRYQKEWLAWALKQENSEIKGGILADEMGMGKTIQAIALVLAQREIRQMVCEPDETSSLPGSSTALPWIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKCREEFSGYDFVITTYSTVESEYRKHMMPPKEKCQYCGKSFSQTKLSVHQRYYCGPDAERTEKQSKQFKKEKKEVNIKKKIQRNMGSGNSDTRCKGSSLLHSVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQIVPYSYYLCKDCDCRILDHSSKECSNCQHSSVRHFCWWNKFVATPIQLYGTDDPGRRAMILLKHKVLKNVILRRTKLGRAVDLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGADVSVDDVEQICGICHEPAEDPVVTSCEHIFCKGCLIDFSASLGRVSCPSCSKLLTVDLTSNKDVGDQSRKTIIKGFRSSSILNRIRLENFQTSTKIEALVCDISEREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKRFTDDPECKIFLMSMKAGGVALNLTVASHVFIMDPWWNPAVEHQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELIFEGTVGGSAEALGKLTEEDMRFLFVT 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral466g00014 856 ProSitePatterns Zinc finger RING-type signature. 611 620 IPR017907 -
Pral466g00014 856 SMART ultradead3 154 431 IPR014001 -
Pral466g00014 856 MobiDBLite consensus disorder prediction 1 106 - -
Pral466g00014 856 ProSiteProfiles Zinc finger RING-type profile. 596 636 IPR001841 -
Pral466g00014 856 MobiDBLite consensus disorder prediction 25 44 - -
Pral466g00014 856 Pfam RING-type zinc-finger 596 633 IPR027370 -
Pral466g00014 856 SMART ring_2 596 635 IPR001841 -
Pral466g00014 856 CDD SF2_C_SNF 678 811 - -
Pral466g00014 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 854 IPR027417 -
Pral466g00014 856 Gene3D - 160 303 IPR038718 -
Pral466g00014 856 Gene3D - 514 854 IPR027417 -
Pral466g00014 856 SUPERFAMILY RING/U-box 593 640 - -
Pral466g00014 856 SMART helicmild6 717 800 IPR001650 -
Pral466g00014 856 Pfam Helicase conserved C-terminal domain 700 800 IPR001650 -
Pral466g00014 856 Coils Coil 324 344 - -
Pral466g00014 856 Gene3D - 304 513 IPR038718 -
Pral466g00014 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 498 IPR027417 -
Pral466g00014 856 CDD DEXDc_SHPRH-like 158 441 - -
Pral466g00014 856 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 426 IPR014001 -
Pral466g00014 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 661 IPR013083 -
Pral466g00014 856 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 846 IPR001650 -
Pral466g00014 856 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 56 854 - -
Pral466g00014 856 Pfam SNF2-related domain 172 573 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral466g00014 Pral-Chr466 63228 70204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral466g00014 98 856 RAD5 or RAD16-like Gene Family AT1G05120 66.197 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral466g00014 SNF2_N 1.5e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral466g00014 K15083 - gmx:100786366 1213.75