Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral466g00013 ATGGAGCTACGTTCTTGGAGGCGACTTCCTACTCCTGATATCGATGCAACAAGAAATGAACAACCACCCGATGATGCCTCTGGAGAAGCTAAAACTGCTAGCGATTGTGGCAATAATGCAATTGAAGTCTCTTCAGATGATGAAGCAGCTTTGAACTCCTTTCCTGACTTAAATGAAGAACCTACTTCAAGCTTTTGCTCTTCTGATGGGTTAGGCGACAGCTCTGACTCATCTCGGCCTGGAAAGAGAAGAGGAAAGAAAAGGAGAAAACTCAGCTCTAAAATTGGAGAGTCCAGTCAGGACATAGGAGTGTTGGAGCATGGGGACGATGATGGCTCCTCAGGAGTTCAGCAGCAATCAACTGAACATGATTTGGCTAGCCTGAGAAAGAAGAAAAAAACCAAAAGACCAAGAAAAAAAACAAAACAAGTGTTGTTGTGGAATGTTTGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTTTCAGAAGATGTTGAGTTGGGTCATCAGAATGAACTAATGAATGAAACTGCTGAGGCTTCCTCTGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCCGAAATTAAGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAATCCGGCAAATGGTTTGTGAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTACAGCATTGCCTTGGATCAAAGGAACGCTTGTAATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAAGAGAGGGAAGTGTAGGGAAGAGTTCTCAGGGTATGATTTTGTAATAACTACATACTCTACTGTTGAATCAGAGTATAGGAAGCATATGATGCCTCCTAAAGAGAAGTGTCAATATTGTGGCAAATCTTTTAGCCAGACGAAGTTATCTGTTCACCAGAGATATTATTGCGGGCCTGATGCTGAAAGAACAGAAAAGCAATCGAAGCAATTCAAGAAAGAGAAAAAAGAAGTCAATATAAAGAAGAAAATTCAGAGGAACATGGGATCAGGGAATTCAGATACCAGATGCAAGGGGTCGTCACTTTTACATTCTGTCAAGTGGCAGCGGATCATTTTGGATGAGGCGCACTATATAAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCTCTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTAGGAGAGCTGTATTCTCTGATACGTTTCCTGCAAATAGTTCCTTATTCCTATTACCTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCAGCACAGTTCTGTCAGACATTTCTGTTGGTGGAATAAATTTGTAGCCACGCCAATTCAATTATATGGAACCGATGATCCCGGTAGGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGAGCTGTTGATCTCGCACTTCCACCTAGAATCGTTTCACTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATATAATGAGAGCCAGGCGCAGTTTAATACATATGTGGAATCGAATACTTTGACAAATAACTATGCTCATATATTTGACCTCCTCACCAGACTCCGGCAGGCTGTTGACCATCCGTACCTTGTGGTATATTCTCAAGCTGCATCATTAAAAGCTGGGGCTGACGTTAGCGTTGACGATGTTGAACAAATATGTGGCATTTGTCATGAGCCTGCAGAAGATCCTGTCGTTACCTCATGTGAACACATCTTTTGTAAGGGATGCTTGATAGACTTCTCTGCTTCCTTGGGGCGAGTGTCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCAAACAAGGATGTAGGGGATCAGTCTAGAAAAACAATAATAAAGGGGTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTTGAGAACTTTCAAACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTTATGGTAGAAAGGGATGGCTCCGCAAAAGGGATTGTTTTTAGCCAATTCACTTCATTCTTGGATCTCATAAACTATTCCCTGCTCAAGTCTGGTGTTTCTTGTGTTCAATTGAATGGAAGCATGTCATTAGCTGCTCGGGATGCAGCCATTAAGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCATGAAAGCCGGTGGTGTTGCCCTCAATTTGACCGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCCGTGGAGCATCAAGCTCAAGATAGAATTCACCGGATAGGGCAATATAAACCAATCAGAATTGTCAGGTTTGTGATCGAAAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATATTTGAAGGGACTGTAGGCGGCTCTGCTGAGGCTCTGGGCAAACTCACGGAGGAAGACATGAGATTTCTATTTGTTACCTGA 2646 0.418 MELRSWRRLPTPDIDATRNEQPPDDASGEAKTASDCGNNAIEVSSDDEAALNSFPDLNEEPTSSFCSSDGLGDSSDSSRPGKRRGKKRRKLSSKIGESSQDIGVLEHGDDDGSSGVQQQSTEHDLASLRKKKKTKRPRKKTKQVLLWNVWEEQHERWIDENFSEDVELGHQNELMNETAEASSDLTMPLLRYQKEWLAWALKQENSEIKGGILADEMGMGKTIQAIALVLAQREIRQMVCEPDETSSLPGSSTALPWIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKCREEFSGYDFVITTYSTVESEYRKHMMPPKEKCQYCGKSFSQTKLSVHQRYYCGPDAERTEKQSKQFKKEKKEVNIKKKIQRNMGSGNSDTRCKGSSLLHSVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQIVPYSYYLCKDCDCRILDHSSKECSNCQHSSVRHFCWWNKFVATPIQLYGTDDPGRRAMILLKHKVLKNVILRRTKLGRAVDLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGADVSVDDVEQICGICHEPAEDPVVTSCEHIFCKGCLIDFSASLGRVSCPSCSKLLTVDLTSNKDVGDQSRKTIIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKRFTDDPECKIFLMSMKAGGVALNLTVASHVFIMDPWWNPAVEHQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELIFEGTVGGSAEALGKLTEEDMRFLFVT 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral466g00013 881 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 53 879 - -
Pral466g00013 881 Coils Coil 355 375 - -
Pral466g00013 881 Gene3D - 335 544 IPR038718 -
Pral466g00013 881 Pfam Helicase conserved C-terminal domain 711 825 IPR001650 -
Pral466g00013 881 SMART ring_2 627 666 IPR001841 -
Pral466g00013 881 ProSitePatterns Zinc finger RING-type signature. 642 651 IPR017907 -
Pral466g00013 881 ProSiteProfiles Zinc finger RING-type profile. 627 667 IPR001841 -
Pral466g00013 881 MobiDBLite consensus disorder prediction 1 137 - -
Pral466g00013 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 871 IPR001650 -
Pral466g00013 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 457 IPR014001 -
Pral466g00013 881 CDD DEXDc_SHPRH-like 189 472 - -
Pral466g00013 881 SMART helicmild6 742 825 IPR001650 -
Pral466g00013 881 SMART ultradead3 185 462 IPR014001 -
Pral466g00013 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 529 IPR027417 -
Pral466g00013 881 SUPERFAMILY RING/U-box 624 671 - -
Pral466g00013 881 CDD SF2_C_SNF 709 836 - -
Pral466g00013 881 Gene3D - 191 334 IPR038718 -
Pral466g00013 881 Pfam SNF2-related domain 203 604 IPR000330 GO:0005524|GO:0140658
Pral466g00013 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 692 IPR013083 -
Pral466g00013 881 MobiDBLite consensus disorder prediction 1 25 - -
Pral466g00013 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 879 IPR027417 -
Pral466g00013 881 MobiDBLite consensus disorder prediction 56 75 - -
Pral466g00013 881 Pfam RING-type zinc-finger 627 664 IPR027370 -
Pral466g00013 881 Gene3D - 545 879 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral466g00013 Pral-Chr466 63228 70204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral466g00013 129 881 RAD5 or RAD16-like Gene Family AT1G05120 66.710 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral466g00013 SNF2_N 1.6e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral466g00013 K15083 - gmx:100786366 1238.4