Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4669g00001 ATGGATTTGGCACCCATCACCACCGCCTCATCAGCCGTCACCGCCACCGCCCACTTTGATGCTCTCCATGCTCCAACCCCACCGCCTACCCACCCCGCCAAGTCTCCGTCTTTCGCCAACGGCTCCCACAAGCGCCACCACCCTTCGCCTCATCCCCCGCCGCCCGCGGTGGTTTCCTACAAGGAATGCCTCAAGAACCACGCCGCCACCATCGGCGGTCATGCGCTTGACGGTTGCGGCGAGTTCATGCCTTCATCATCCTCCAACCCCAGTGACCCCCGCTCTCTCAAATGCGCCGCGTGTGGTTGCCACCGCAACTTCCACCGCCGTGACCCCCAAGAGCATCATCACTCCAGCCCCAACTTCCTAAGCTGCTTCTATCCTCCGCTTCCGCCGCCGCCGCCGCCACAGGTAGCTCCCCGGGGATTAAGCCCGAGCACTAGCCCAAGCATGAGCCCCAGCTCAAGCCCGAGCAGCGCCAGTCCGAGCCCGTTATCAAGCCCGTCGCCGCCACCGGTCTCGCATTTCCCTCCTTCTTCGTACCACACATCGGCACCGCATATGCTGATGGCGCTCGGGAACGTTTATTCTGCTCCGTCCGATGAACAGCATCGGAGCTTCATGAATTATTCGGCGATGAAGACGACGGAGAAAGAGAGCCCAGGCGGGAGAAAGAGGCACAGGACGAAATTCAGCCAAGAGCAGAAGGAGAAGATGTTTCAGTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGAGAAGATAGAATGGTCCAAGATTTCTGCAATGAGGTTGGGGTTTCAAGAGGAGTGTTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAAGAAAAAATCAGAAATTGGGAATACCCAGACTGAGAAAATCAACGAAGGTGATGACTGTTCAGCTGGTAATAATCGAGGTGGCGGCGGCGGGTTTGATTGTGATATTAACGACGATAATGATCACAGGAATGAAGACAGCTGCATCAATCTTCAAGTCTCGGTTAATGGGTCGTCGTCTTCTTGA 1035 0.5565 MDLAPITTASSAVTATAHFDALHAPTPPPTHPAKSPSFANGSHKRHHPSPHPPPPAVVSYKECLKNHAATIGGHALDGCGEFMPSSSSNPSDPRSLKCAACGCHRNFHRRDPQEHHHSSPNFLSCFYPPLPPPPPPQVAPRGLSPSTSPSMSPSSSPSSASPSPLSSPSPPPVSHFPPSSYHTSAPHMLMALGNVYSAPSDEQHRSFMNYSAMKTTEKESPGGRKRHRTKFSQEQKEKMFQFSEKLGWRMQKGEDRMVQDFCNEVGVSRGVFKVWMHNNKNTFKKKSEIGNTQTEKINEGDDCSAGNNRGGGGGFDCDINDDNDHRNEDSCINLQVSVNGSSSS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4669g00001 344 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Pral4669g00001 344 Gene3D - 210 285 - -
Pral4669g00001 344 FunFam Zinc-finger homeodomain protein 2 211 285 - -
Pral4669g00001 344 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 21 57 - -
Pral4669g00001 344 SUPERFAMILY Homeodomain-like 217 285 IPR009057 -
Pral4669g00001 344 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 214 236 - -
Pral4669g00001 344 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 282 - -
Pral4669g00001 344 NCBIfam homeobox domain, ZF-HD class 224 281 IPR006455 -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 143 162 - -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 218 236 - -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 292 321 - -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 163 177 - -
Pral4669g00001 344 MobiDBLite consensus disorder prediction 133 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4669g00001 Pral-Chr4669 7587 9012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4669g00001 23 316 ZF-HD Transcription Factor Family AT3G28920 44.918 5.06e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral4669g00001 ZF-HD_dimer 5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4669g00001 - - gmx:102660309 301.212