Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4667g00111 ATGGAGGAGAGGAAATTCGTGTGCAAGTATTGCAACAAGAAGTACCCGTGTGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGACTAATGAACATTCATCACATCAATCCAAGGAAGTTAAGACCAATGCCGATGATAGTGTCGCCAAGTTCGATGGAGGAAGGAAGCGGAAGAGAGATTTTGGTTCTGAAGAAGCTTCTTCTGAAATCCCCATTTATGGTCTCAGAGAGAATCCCAAGAATACGACGAAGCTCCTACATCCCAACTCTGCTATACAAAAAGAAAGATTCTGCAAAGAATGTGGGAAAGGCTTTTTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTGTCACTCGGAGAAAGATAAAGGGACGAAGAACAAGTTTGAGAACAATTCTGGGTTTAGCGGGAAGCAGAAAATGGTGATGATGGATAGCCAATCGGACACAGAGACTTCTGCTCCGAGTTATCCTAGGAGATCCAGAAGAACGAGGTTCAAGACAGTGAATACTGATACAAATGGTCACGCTTCTTCTGTTCCTTTGACGAATGGTTCTTCCTCTGTGTCTGAGGTTGAGCAAGAACAAGAAGAGGTCGCTAAGTGTTTGATGTTATTGTCCAGAGACTCCGGCCATAGGGGTCGTTTTGCCTTGCCTACTGAGTCTTCGGACAACAATTCTGTGGTGGTAGAGGTAAAATCACCGTCTGTGGACACGAGAATCAAATTAAAAAATGGTAAGAAAAGCGTTATGTCTAATGGTGTTGAGATGGTGGAGGAGAAGAAGAAGGCGGTACTGTATAAGAGCATGAAAGTGAAGTCTGCTGAGATTGTTGATTCTGATAATTCAGATTCTGGGTATTTCAGAAATGGTCCCAAAAAGTTGGATTTGGATGTTCCGATTGATAAGCATCTCAGAAGTAGGGAATTCAAAACACCAAAAGTGGAAGACAGGTCTAGTTTTGAGTTTGATCGGAAACACGACTCTGAATATGGGAAGAAGATGCTGATCAAGAACAGAGAAAGAACCAGAAGCACAGAACCGAGAAGACTAATTTTGGAGGATTTGGACTATGATACAACAGATGGACTGTCAAGGGAAGAGTTCATCAATTGGAGAAAGAGGCCAAGCTATAGTTCCATTTTCCAAAACAATTCAATTGGTGTTTCTAGCAAAGAGACACCAAATGGTTTTCAGAATGAAGGAGCATGGAAACAAGAGAGCTTAAACAGTGAAAAAATTATCAGCGGCTCTTATGATTCAGCATATGATGACAGTGATGAAAGTAGCACAGACACTGATGCTTGTCCTGCTCCGATATCTCATAGCAGCAAAGTCATCAATGGAAAAAAGATCAGCAAGTCCAAGAAGAAATTGAAGCCAAAGAAAAGCAGGGAGCATAGATGCCCCATCTGCTACAAAATTTTCAAGTCAGGGCAGGCATTAGGAGGTCACAAAAGGTCTCATTTTGTTGGAGGTTCTGAAGAGAACACCCTCGTGATCAAACAAGATTCTCCTGTTGTTCCATGCCTGATTGATCTCAATCTTCCTGCTCCTGTTGATGAGTAG 1572 0.4262 MEERKFVCKYCNKKYPCGKSLGGHIRTHMTNEHSSHQSKEVKTNADDSVAKFDGGRKRKRDFGSEEASSEIPIYGLRENPKNTTKLLHPNSAIQKERFCKECGKGFLSLKALCGHMACHSEKDKGTKNKFENNSGFSGKQKMVMMDSQSDTETSAPSYPRRSRRTRFKTVNTDTNGHASSVPLTNGSSSVSEVEQEQEEVAKCLMLLSRDSGHRGRFALPTESSDNNSVVVEVKSPSVDTRIKLKNGKKSVMSNGVEMVEEKKKAVLYKSMKVKSAEIVDSDNSDSGYFRNGPKKLDLDVPIDKHLRSREFKTPKVEDRSSFEFDRKHDSEYGKKMLIKNRERTRSTEPRRLILEDLDYDTTDGLSREEFINWRKRPSYSSIFQNNSIGVSSKETPNGFQNEGAWKQESLNSEKIISGSYDSAYDDSDESSTDTDACPAPISHSSKVINGKKISKSKKKLKPKKSREHRCPICYKIFKSGQALGGHKRSHFVGGSEENTLVIKQDSPVVPCLIDLNLPAPVDE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4667g00111 523 SMART c2h2final6 6 28 IPR013087 -
Pral4667g00111 523 SMART c2h2final6 468 490 IPR013087 -
Pral4667g00111 523 SMART c2h2final6 97 119 IPR013087 -
Pral4667g00111 523 MobiDBLite consensus disorder prediction 30 69 - -
Pral4667g00111 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 468 490 IPR013087 -
Pral4667g00111 523 ProSitePatterns Zinc finger C2H2 type domain signature. 470 490 IPR013087 -
Pral4667g00111 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Pral4667g00111 523 MobiDBLite consensus disorder prediction 421 441 - -
Pral4667g00111 523 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Pral4667g00111 523 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 523 - -
Pral4667g00111 523 SUPERFAMILY beta-beta-alpha zinc fingers 98 490 IPR036236 -
Pral4667g00111 523 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Pral4667g00111 523 Pfam C2H2-type zinc finger 468 490 - -
Pral4667g00111 523 Pfam C2H2-type zinc finger 99 121 - -
Pral4667g00111 523 Pfam C2H2-type zinc finger 6 29 - -
Pral4667g00111 523 MobiDBLite consensus disorder prediction 30 66 - -
Pral4667g00111 523 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Pral4667g00111 523 MobiDBLite consensus disorder prediction 130 160 - -
Pral4667g00111 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Pral4667g00111 523 MobiDBLite consensus disorder prediction 122 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4667g00111 Pral-Chr4667 757330 759650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4667g00111 421 523 C2H2 Transcription Factor Family AT1G26610 51.923 1.83e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4667g00111 zf-C2H2_6 2.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4667g00111 - - pcin:129310630 721.079