Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4667g00093 ATGGGCAGGGTGAAGCTGAAGATAAAGAGGCTGGAGAACATTAATGGCCGTCAGGCGACCTATGCTAAAAGGAGGAATGGAATTATTAAAAAGGCTTCGGAATTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCGTCTGGGAAGCCAGCACTATGCGGAGGGAGGCGTAGCATAGAGGAGGTTATTGCAAAGTATGCACAACAAACTCCACAGGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAAGATACAAGAATTTCTGGGTACAAGTGGTCAAACTGCTGAGGACCTAAAGAATAACGCCACATTATTACGAACGAGAATATCTGAAATACATACAAGATTAAGCCATTGGACTGAACTTGATAAAATCAACAATGTGGAACAATTGGAACAGATGGAAAATTCTCTCCGGGAGTCAATTAATCAACTTCGAATGCATAAGGAAAATGTACAAAAGCAAAAACTTGAATCAGTGCGATGCAGTAACCAGTTCAATGAGTTGCACATTCCCTTCAGGATCAGTGCCAATCAACATCTCCAACCTCTATCATGGATTGCCAACAATGACAGCCAACATATGGTTTTACCTGATGATTCAAACTTGCTTCTTCCCAAAGACATAGAGTGTTCTGCAAGCTCCTCTTTCGGGGGTTATGCTAGTTATCTTGGCTCAAGTCCAAAGCCAGATCTTTCTAATTATGGGCAAGAAAATAGTGTCCTCTGTGACATGACAAGCACCGCTTCTCTGAGACTACAATTAGGCGGGCAGTTTCCGTACCTGCCATATAATTTCAATCCACTGCATGACATCAATTTCCAGCCATCTGCTGAGATCAACCCACATGACAACCCCATAGATTATCATCCTAATAAATGCTTTGAAGCTCCTAGACCTGCCTTCGACTCTAACCACAATGGATGGGCTTCTACATCAGGACATTGTGCTGTGACCACCATGTTTGATGAATATCTGTATGCCCAGGTACCACAGCGACACTGA 1059 0.4221 MGRVKLKIKRLENINGRQATYAKRRNGIIKKASELSILCDIDIILLMFSPSGKPALCGGRRSIEEVIAKYAQQTPQERAKRKLESLEALKKTFKKLDHDVKIQEFLGTSGQTAEDLKNNATLLRTRISEIHTRLSHWTELDKINNVEQLEQMENSLRESINQLRMHKENVQKQKLESVRCSNQFNELHIPFRISANQHLQPLSWIANNDSQHMVLPDDSNLLLPKDIECSASSSFGGYASYLGSSPKPDLSNYGQENSVLCDMTSTASLRLQLGGQFPYLPYNFNPLHDINFQPSAEINPHDNPIDYHPNKCFEAPRPAFDSNHNGWASTSGHCAVTTMFDEYLYAQVPQRH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4667g00093 352 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pral4667g00093 352 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4667g00093 352 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4667g00093 352 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4667g00093 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Pral4667g00093 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Pral4667g00093 352 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Pral4667g00093 352 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pral4667g00093 352 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral4667g00093 352 Coils Coil 76 96 - -
Pral4667g00093 352 Gene3D - 15 96 IPR036879 GO:0003677|GO:0046983
Pral4667g00093 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4667g00093 352 Coils Coil 146 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4667g00093 Pral-Chr4667 655969 662746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4667g00093 1 350 Type I MADS-box Gene Family AT2G03060 48.031 6.11e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4667g00093 SRF-TF 4.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4667g00093 - - lang:109356063 496.123