Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4667g00044 ATGAAGAAAGACTACCTGGAATTGCAGTTAGAAGACCCAATTGGCGATGCTATCTCCAGGATTCAGTTCGCCCCTAACTGTAGCAATCTACTCATATCTTCATGGGACTCCAGCCTTCGCTTATACGACGTGGACAATTCTGTGCTTAGATTAGAAGCCCCTTCAGAAGCGGCGCTTCTGGATTGTTGTTTCCAGGACGACTTGGTTGCTTTCGCCGCTGGTTCTGATGGATTAATTCGAAGGTATAACTTGCATTTGGGAATTATTGATAGAATGGGCAATCATGACGATGTAGCAACATGCGTTGGATATGCCAATGAAATATGTCAGTTGATCACTGCCGGATTTGATAAGTTATTGTTGTGGGATATTCGTATGGAGAAGGCTCCTTCATGCTCAAAAATTCTAGGCGCAGAGGTGAACTCCATGTCTGTCTCTAGGTTGAATCTGACGGTTGGAATAGGAACATCAGTGCATATCTATGATCTTCGTTATTTTGACAAACCAGTTGCATCAAGTGAACCACACAAAGGCACACAGATTAGATGTGTTAGTTCAATTCCTTACACAAGAGGATTTGCAGTTGGGTCGGTAGATGGGAGGGTAGCATTGCAGATTTCTGATTCTTCTAGTTCAAATGACATTGAATTTATATTCCGGTGTAATCCTAAATCGATGGATGGAAGACATCATTTGGCATCAGTTAATGACATTATATTCAGTCCACTTGTTCAAGGTGCTTTTGCCACTGGTGACAATGAAGGTTATGTGATTTTATGGGATGCTAGTAGTAGAAAAAGACTCATTGAGTTACCTAAATACCCGAATAGTGTGGCATCCTTGTCATACAACCACGTGGGACAGCTTTTGGCTGTGGCTTCAAGTTACACATACCAAGAAGCAAATGAGATAGAAGAACCTCCTCGTATCTTCATTCACAATACGGACAACATCAGTATTAGATCAGTTTCTGCCAGCAATTCTGCTAGTAGAAGCTGTGAAGGGTTTACTTGGGAATTGATTCACTCACTAGCTTCAGTCGAGTCACTTCCTAGATCTAGCTCAAGAAACCAGGCTGCGAATCATCTCCCCTTCCTCATAAAATCGCGATTACCCTGTTCTACCAGGTTCTCTGCTTCTTGTCTCGGCTCTCTCTCTCTCTCTCTCTATCACTCTTTTCTCTCTCTGGTTTTAGGCGGAGCCATGTCGGACGAGGAGCATCATTTCGAGTCCAAAGCCGATGCCGGAGCTTCGAAGACCTTCCCTCAGCAGGCCGGTACCATCCGTAAGAACGGTTACATTGTGATCAAAAACAGGCCCTGCAAGGTTGTGGAGGTTTCAACTTCCAAGACTGGCAAGCATGGGCATGCGAAGTGTCACTTTGTTGGCATCGACATTTTTACTGGGAAAAAGCTGGAAGATATTGTTCCTTCTTCACACAACTGTGATGTCCCACATGTCAACCGCACTGATTACCAGCTGATTGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGACTCTGGTGGTACCAAGGACGATCTGAGGCTTCCAACTGATGAAAATCTGCTTACACAGATCAAGGATGGCTTTGCTGAGGGTAAAGATCTGGTTGTGAGTGTTATGTCTGCCATGGGTGAGGAGCAGATTTGTGCCCTGAAGGATATTGGCCCCAAGTGA 1683 0.4444 MKKDYLELQLEDPIGDAISRIQFAPNCSNLLISSWDSSLRLYDVDNSVLRLEAPSEAALLDCCFQDDLVAFAAGSDGLIRRYNLHLGIIDRMGNHDDVATCVGYANEICQLITAGFDKLLLWDIRMEKAPSCSKILGAEVNSMSVSRLNLTVGIGTSVHIYDLRYFDKPVASSEPHKGTQIRCVSSIPYTRGFAVGSVDGRVALQISDSSSSNDIEFIFRCNPKSMDGRHHLASVNDIIFSPLVQGAFATGDNEGYVILWDASSRKRLIELPKYPNSVASLSYNHVGQLLAVASSYTYQEANEIEEPPRIFIHNTDNISIRSVSASNSASRSCEGFTWELIHSLASVESLPRSSSRNQAANHLPFLIKSRLPCSTRFSASCLGSLSLSLYHSFLSLVLGGAMSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4667g00044 560 SMART WD40_4 3 43 IPR001680 GO:0005515
Pral4667g00044 560 SMART WD40_4 214 261 IPR001680 GO:0005515
Pral4667g00044 560 SMART WD40_4 44 83 IPR001680 GO:0005515
Pral4667g00044 560 SMART WD40_4 166 208 IPR001680 GO:0005515
Pral4667g00044 560 SMART WD40_4 85 123 IPR001680 GO:0005515
Pral4667g00044 560 NCBIfam translation initiation factor IF-5A 419 554 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Pral4667g00044 560 Gene3D - 487 559 IPR012340 -
Pral4667g00044 560 Gene3D - 2 329 IPR015943 GO:0005515
Pral4667g00044 560 SMART eIF_5a_2 486 555 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Pral4667g00044 560 FunFam Eukaryotic translation initiation factor 5A 487 559 - -
Pral4667g00044 560 PANTHER MRNA EXPORT FACTOR AND BUB3 8 316 - -
Pral4667g00044 560 SUPERFAMILY Nucleic acid-binding proteins 487 557 IPR012340 -
Pral4667g00044 560 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 270 IPR001680 GO:0005515
Pral4667g00044 560 SUPERFAMILY WD40 repeat-like 15 295 IPR036322 GO:0005515
Pral4667g00044 560 FunFam Eukaryotic translation initiation factor 5A 402 486 - -
Pral4667g00044 560 FunFam Mitotic checkpoint protein BUB3.3 6 321 - -
Pral4667g00044 560 CDD S1_eIF5A 487 557 - -
Pral4667g00044 560 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 451 458 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Pral4667g00044 560 Gene3D - 402 486 IPR014722 -
Pral4667g00044 560 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 486 555 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Pral4667g00044 560 SUPERFAMILY Translation proteins SH3-like domain 416 494 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4667g00044 Pral-Chr4667 218128 226395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4667g00044 402 560 Eukaryotic Initiation Factors Gene Family AT1G13950 89.308 7.41e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4667g00044 K02180 - pop:7492906 665.611