Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4667g00011 ATGGAGGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCATGTGGAAAGTCTCTGGGTGGACACATCAAGATTCATATGACTACTGAACATTATTCATCGCCTCAATCCAAGGAAGGTAAAACCAATGCCGATGATAGTGTCGTCGAGTTCGATGGTGGAAGGAAGAGGAAGAGAGATTCTGGGTCTGAAGAAGCTGCCTCCGGAAACCCCATTTATGGTCTTCGAGAGAATCCCAAGAAAACAACGAGGTTCGTACATTCCAGCTCTGTTGCACAACAAGAGAGATTCTGCAATGAATGTGGGAAAGGCTTTCTGTCTCTGAAAGCTCTCTGCGGCCACATGGCTTGTCATTCAGAGAAAGATAAGGGGATGACGAACAAGTTTGAGAACAATTCTGGGTTTAGCATGAAGCAGAAATTGGCAATTGATAGCCAATCGGACAATGAGACATCTGCTCCGAATCATCCTAGGAGATCCAGAAGAATGAGGTTCAAGAACCCGAATACTGACAAAAACGATCACCGTTCTTTTGTTTCTTTGGCGAATGGTTCTTCCTCTGTGTCTGAGGTGGAGCAGGAACAAGAAGAGGTCGCTAGGTGTTTGATGTTATTGTCCAGAGACTCTAGCCATAAGGGTCGTTTTCTTTTGCCCACTGAGTCTTCGGACAACAATTCTGTTGTGGTAGAGGCAAAATCACCGTCTGTGGACACTATCATTACTTTCAACAATGGTAAAAAGAGCTCTGTGTCTAATGGTTTTGAGATCGTGAAGGAGAAGAAGAAAGTGGAGCAGTATAATAGCATGCAGTTGAAGTCTGCTGAGATTGTCGATTCTGATAATTCAGATTCTGGGTATTTTAGGAATGGTCACAAAAAGTTGGATTCTTCAATGTATGGGTATCCTAGGAATGGGGACTTAAAGACATCAAAAGTGGAAGCCAGGTCTAGTTGTGAGTTTGATCAGAACTATGACGCTGAATTGAGGCAGAAGATGCTAATCAACAACAGAGGAAGAACCAGATGCACTGAACCCAGAAAGCTAACTTTGGAGGATTTGGACTACAATACAAAAGATGGAGCGGCAAGGGAAGAGCTCATCAATTGGAGAAGGAGACCAAGATATGGTTCTCTTCGCCAACAAAATTCAGTTGGTGTTTCTTGCAAAAGGACACCAAATGGTTTTCACAATGAGGAGTCACTGGAGACAGAGAGCTTAAACAGGGAAAAAATGACCAAGGACTGTCAAGATTCATCTGGCGAGAGTGATGAAAGCAGCACAGACACTGATGCTTATACTGCTCCGAGACCTCATAACAGCAAGGTTATCAATGGAAAGAAGGCCAGCAAGTCCAGGAAGAAATTGAAGTTGAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAAAAATTTTAAGTCAGGCCAAGCATTAGGAGGTCACAAAAGGTCTCATTTTGTGGGAGGCTCTGAAGATAACACACTGGTGATCGGACAAGGCCTTCCTGTGGTTCCATGCCTGATTGATCTCAACCTACCTGCTCCTGTTGATGATTAG 1563 0.4383 MEERKFVCKYCNKKYPCGKSLGGHIKIHMTTEHYSSPQSKEGKTNADDSVVEFDGGRKRKRDSGSEEAASGNPIYGLRENPKKTTRFVHSSSVAQQERFCNECGKGFLSLKALCGHMACHSEKDKGMTNKFENNSGFSMKQKLAIDSQSDNETSAPNHPRRSRRMRFKNPNTDKNDHRSFVSLANGSSSVSEVEQEQEEVARCLMLLSRDSSHKGRFLLPTESSDNNSVVVEAKSPSVDTIITFNNGKKSSVSNGFEIVKEKKKVEQYNSMQLKSAEIVDSDNSDSGYFRNGHKKLDSSMYGYPRNGDLKTSKVEARSSCEFDQNYDAELRQKMLINNRGRTRCTEPRKLTLEDLDYNTKDGAAREELINWRRRPRYGSLRQQNSVGVSCKRTPNGFHNEESLETESLNREKMTKDCQDSSGESDESSTDTDAYTAPRPHNSKVINGKKASKSRKKLKLKKSRDHECPICYKNFKSGQALGGHKRSHFVGGSEDNTLVIGQGLPVVPCLIDLNLPAPVDD 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4667g00011 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Pral4667g00011 520 MobiDBLite consensus disorder prediction 45 66 - -
Pral4667g00011 520 MobiDBLite consensus disorder prediction 33 81 - -
Pral4667g00011 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Pral4667g00011 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 465 487 IPR013087 -
Pral4667g00011 520 MobiDBLite consensus disorder prediction 397 422 - -
Pral4667g00011 520 SUPERFAMILY beta-beta-alpha zinc fingers 2 34 IPR036236 -
Pral4667g00011 520 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Pral4667g00011 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 519 - -
Pral4667g00011 520 SMART c2h2final6 465 487 IPR013087 -
Pral4667g00011 520 SMART c2h2final6 98 120 IPR013087 -
Pral4667g00011 520 SMART c2h2final6 6 28 IPR013087 -
Pral4667g00011 520 MobiDBLite consensus disorder prediction 380 458 - -
Pral4667g00011 520 ProSitePatterns Zinc finger C2H2 type domain signature. 467 487 IPR013087 -
Pral4667g00011 520 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Pral4667g00011 520 MobiDBLite consensus disorder prediction 380 396 - -
Pral4667g00011 520 SUPERFAMILY beta-beta-alpha zinc fingers 99 487 IPR036236 -
Pral4667g00011 520 MobiDBLite consensus disorder prediction 145 180 - -
Pral4667g00011 520 Pfam C2H2-type zinc finger 100 122 - -
Pral4667g00011 520 Pfam C2H2-type zinc finger 465 487 - -
Pral4667g00011 520 Pfam C2H2-type zinc finger 6 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4667g00011 Pral-Chr4667 61462 63817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4667g00011 1 520 C2H2 Transcription Factor Family AT1G26610 38.251 1.26e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4667g00011 zf-C2H2_6 3.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4667g00011 - - pcin:129310630 788.104