Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4665g00003 ATGGAATCTTGGAGTTACGCGTCAGAAGAGAAAAGCTATTTGTTTTCAGATGAAATGGATTTCCCGCTGGATGCTTATATGAGAAGTAGAAGACCAATGGTTGAATGGGACAATAAAGCCTCTTATATCTTTGAGAAAGATGGGTTTGTTTCAGATAAAGAGGTAATTAAAAGCGTGGAGTTTGTAGACTTGGGGTTTCCTGATTTGTTCAGAAGGCCTGTTCATGGTAGCCAGCCACCGGAAGCATCAAACTGTGAGCATGACAGTGATTCTAGTAAGAAAATTAATTCCTCTACACATGTTATAGCTCTAAATTCACCTTTGGGTGAAGTAGAATCTGAGTCAAGGCATTCATGTTCTCTAGTTGAACCTAAGATCCATGATTCTTCACTGATTGATTTAAAGCTAGGGAGAGTAGGAGACTGTAAAGATGCAAGTAGTGATAAGAATGACAATGAGGGGTTCGCTTTTCAACCTATGTATCCATCCACGCTTACAAAGAGAGCTCGCACTTCCAGCTTACCTACCCAAACACCTGTTTGTCAAGTTTATGGTTGTAGCAAGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCACAAAGTTTGTGATGTTCATTCCAAGACAGCCAAAGTTATTGTTAATGGAATTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGTAGACGCCTTGCTGGACACAATGAACGTCGAAGGAAGCCTCAGTTTGATTACATCTCTGGTAAACCACAGAAGATAATGCAGTCATGTCAAGGTACCAAATATTTTGGGGCTTCATTGCAGAAGGGACCCCAGTTTGCCTTTCACGACATGTTTCAAAGTGGCATTTTTCACTCGGGAAAGTTTGAGCAAAGCAATCAGATTGGACACATCAAATTTGAAGATGAATCAATTTACAGTTCTCAATTTGCAGTACCCATAACAAATGGTCAAGAGTTATCCAGGGCCTCCAACTCCAGCAGTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGGATCTAACACGCTATTCAGCTGGTTCCCATATATCTCAAGGCATCTGCACACAGCACAGTGGTGGCCAAGTTTCTGATACACCTTTTGGGATAAGTTCTCTGGATAAATATGTGCCAAGTCAGTCTTTTTCACGTGAGATAAACTCTATGGAAGTTACCCAGAACAGACCCATGACGCCTTCTGATGTTGGTCATGCTCTTCAACTTGAAGTCCATGGAGATGATACCTACAAACCATCAGATATGTTAAATGCCAAGTATCGTCCTCCTGTTGAACATAGCTCCACTGTTGATCTGTTCCAATTATCATCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTCTTCAAGTGAAGCACGAAAATGAGGACGGCTGCTTTTTTCCAACCATGTGA 1455 0.4199 MESWSYASEEKSYLFSDEMDFPLDAYMRSRRPMVEWDNKASYIFEKDGFVSDKEVIKSVEFVDLGFPDLFRRPVHGSQPPEASNCEHDSDSSKKINSSTHVIALNSPLGEVESESRHSCSLVEPKIHDSSLIDLKLGRVGDCKDASSDKNDNEGFAFQPMYPSTLTKRARTSSLPTQTPVCQVYGCSKDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYISGKPQKIMQSCQGTKYFGASLQKGPQFAFHDMFQSGIFHSGKFEQSNQIGHIKFEDESIYSSQFAVPITNGQELSRASNSSSCALSLLSAQSQDLTRYSAGSHISQGICTQHSGGQVSDTPFGISSLDKYVPSQSFSREINSMEVTQNRPMTPSDVGHALQLEVHGDDTYKPSDMLNAKYRPPVEHSSTVDLFQLSSHLQRVEQQRNSLQVKHENEDGCFFPTM 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4665g00003 484 MobiDBLite consensus disorder prediction 73 94 - -
Pral4665g00003 484 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Pral4665g00003 484 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 142 399 IPR044817 GO:0003677
Pral4665g00003 484 Pfam SBP domain 181 254 IPR004333 GO:0003677
Pral4665g00003 484 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Pral4665g00003 484 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Pral4665g00003 484 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4665g00003 Pral-Chr4665 28402 32680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4665g00003 132 482 SBP-box Gene Family AT1G69170 38.919 5.30e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4665g00003 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4665g00003 - - gmx:100797372 597.045