Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4657g00012 ATGGCTACTGCGGAGCTAGACTACTCACGTGCTTCTCGCCGGCACGATAACCACCACACGACGGATGACGACGAGGATTACAGCGTCACAGACAGCATGGACGACGCGGAGGAGGAGACCGATGAAGAAGAGGAGACCAACGGAACAGACGACAGCGACAAGGCGGCCGGGTGGTGCTGGAGGAGGAAAGGCGTGACCGGAGGTTGCGGTTATGGCGGGAAGGTGTTGGACCCGAGGGCCAAGTGGATTCGAGAATGGAACAGGGTGTTCCTGCTGGTGTGCGCGATGGGTTTGTTCGTGGACCCACTCTTCTTCTACGCCCTATCCGTGAGCGAGACGTGCATGTGCCTGTTCGTCGACGGGTGGTTCGCCGTCACCGTCACGGCGCTCCGCTGCATGACGGATGCCCTGCACCTCTGGAACATGTGGCTGCAGTTCAAAATGGGGAAGCGCCACTTCGGAAGCGGCTTGGCCGTGAGCACTAGCCGTCGCCTGGTGGCTCTTGGCTATCTCAAGGTCAAGACAGGCTTCTTCTTCGACCTCTTCGTCATCCTCCCTCTACCGCAGATTGTACTGTGGGTGACAATCCCGTATCTGTTGGAGAAAGGGTCAGTGACATTGGTGATGACGGTGTTCTTAATAATGTTTCTGTTTCAATATCTTCCAAAGATATATCACTCTGTTTGCCTCTTGCGACGCTTGCAAAACCTTTCTGGCTACATTTTTGGCACTGTTTGGTGGGGAATTGCCCTTAACATGATCGCCTATTTCGTGGCCTCCCATGCAGCAGGGGCATGCTGGTACTTGCTAGGGATTCAGAGGGCATCCAAGTGTCTAAAAGAGCAGTGTGGGAAAACAAGTGGGTGTGGATTAAGAATACTGTCTTGTAAGGAACCAATATATTATGGGACAAGTGGGATGGTGAGGGATAGGGCGAGACTCTCGTGGGCAGCAAACAGGCAAGCCAGGTCGACCTGCTTGGATACCTCTGACAACTACGACTATGGAGCTTATAAATGGACCGTTCAGCTTGTCACCAACGATAGCCGACTCGAAAAGATCCTCTTTCCCATCTTTTGGGGCCTCATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACAACAGAATGGCTAGAAGTGGTTTTCAACATCATTGTTTTGACCAGTGGCCTTATTCTCGTCACCATGTTGATTGGGAACATCAAGGTGTTTCTGCATGCGACCACATCAAAGAAGCAAGCGATGCAGCTGAAGATGAGGAACATAGAATGGTGGATGAGGAAGAGGCACCTTCCTCCTGGGTTCCGGCAGCGCGTGCGTAACTACGAGCGGCAGCGATGGGCGGCGACGCGCGGAGTCGACGAATTCGAGATGATCAGAAACCTGCCGGAGGGCCTCCGAAGGGACATCAAGTACCATCTCTGCTTGGACCTGGTCCGACAGGTTCCATTATTTCAGCACATGGATGAACTGGTGCTGGAGAACATCTGCGACCGCGTGAAGTCGCTCATATTCACAAAGGGAGAAACAATAACCAGAGAGGGAGATCCGGTTCAGAGAATGCTGTTCGTAGTGAGGGGTCACCTTCAGAGCAGTCAGGTTCTGAGGGACGGCGTGAAAAGTTACTGCATGTTAGGCCCAGGGAACTTCAGCGGCGACGAGCTCCTCTCGTGGTGTCTGAGGAGGCCGTTCATAGAGCGGCTGCCGCCGTCGTCGTCGACCCTCATCACCCTGGAGACGACGGAGGCGTTTGGGCTCGAAGCGGAGGACGTCAAGTACGTGACGCAGCACTTCAGGTACACGTTCATGAACGAGAAGGTGAAGAGGAGCGCCAGGTATTACTCGCCGGGATGGAGAACTTGGGCGGCCGTCGCCATTCAGCTGGCGTGGCGGAGGCACAGGCATCGTTTGACGTTGGCGTCGTTGTCGTTCATAAGGCCCCGGAGGCCAGTGTCTCGATGCTCTTCCCTCGGGGAGGACAGACTTCGCCTGTACACTGCCCTCTTGACCTCACCAAAGCCTAATCAGGATGACTTTGACTCTTGA 2046 0.5459 MATAELDYSRASRRHDNHHTTDDDEDYSVTDSMDDAEEETDEEEETNGTDDSDKAAGWCWRRKGVTGGCGYGGKVLDPRAKWIREWNRVFLLVCAMGLFVDPLFFYALSVSETCMCLFVDGWFAVTVTALRCMTDALHLWNMWLQFKMGKRHFGSGLAVSTSRRLVALGYLKVKTGFFFDLFVILPLPQIVLWVTIPYLLEKGSVTLVMTVFLIMFLFQYLPKIYHSVCLLRRLQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRASKCLKEQCGKTSGCGLRILSCKEPIYYGTSGMVRDRARLSWAANRQARSTCLDTSDNYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPPGFRQRVRNYERQRWAATRGVDEFEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFMNEKVKRSARYYSPGWRTWAAVAIQLAWRRHRHRLTLASLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4657g00012 681 FunFam cyclic nucleotide-gated ion channel 4 482 600 - -
Pral4657g00012 681 Pfam Ion transport protein 86 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral4657g00012 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 646 - -
Pral4657g00012 681 MobiDBLite consensus disorder prediction 8 26 - -
Pral4657g00012 681 Pfam Cyclic nucleotide-binding domain 505 592 IPR000595 -
Pral4657g00012 681 Gene3D Helix hairpin bin 409 475 - -
Pral4657g00012 681 SMART cnmp_10 484 613 IPR000595 -
Pral4657g00012 681 MobiDBLite consensus disorder prediction 27 49 - -
Pral4657g00012 681 SUPERFAMILY Voltage-gated potassium channels 79 405 - -
Pral4657g00012 681 MobiDBLite consensus disorder prediction 1 53 - -
Pral4657g00012 681 SUPERFAMILY cAMP-binding domain-like 410 598 IPR018490 -
Pral4657g00012 681 ProSiteProfiles cAMP/cGMP binding motif profile. 484 594 IPR000595 -
Pral4657g00012 681 Gene3D Jelly Rolls 482 600 IPR014710 -
Pral4657g00012 681 CDD CAP_ED 484 590 IPR000595 -
Pral4657g00012 681 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4657g00012 Pral-Chr4657 80435 86177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4657g00012 73 680 Ion Channels AT5G54250 81.129 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4657g00012 K05391 - zju:107430493 1129.78