Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4653g00046 ATGAATTATCCTAGCTTTCCGGGCAGTTCATCTTCTCGGAGGACCTGGAAATACGAAGTTTTTCTGAGTTTCAGAGGTGAGGATACTCGGAATAGTTTCGCTGGTCATCTTTTTTCTGCTCTTCAACGGAAAGGTATATTTACCTTCAAGGATGACAAAAGGCTCGAGAAAGGAGAACCCATTAAACCTGAGCTCCTCAAAGCAATTGAGCAATCCCGAATTTCTTTCGTCGTCTTTTCCCAAAACTATGCCGATTCATCATGGTGCTTGGACGAGCTGGCGAAGATATCTGAGGGAATTAGCGAACCAGGATACTTTATCGTACCAATTTTCTTCGATGTCGATCCATCTGATGTTCGAAGACAGAGTGGGAAATATAGAGAATTCTTTGATAAACATGAAAGAGACTTCTGTGATAATATAGATAAGGTTCAAAGATGGAGGATAGCGTTGACTCAAGTAGCCAGTCTTGCTGGTTATGATGTACGGGCTAAATCAGAGTCTGATGTCATTGATGAAATTGTTACTGATGCAATACGCAAATTGGGTCATAGATTCTCAAGTCTGGCTGATGATCTAGTTGGGATGCAATCTCGTGCAGAAGCATTTGAAAACCTTTTAGATTTAGAATCAGAAGATGTTCGAAAAGTAGGCATGTGGGGGATGCCTGGAGTAGGGAAGACTACTCTAGCTGCAGTTGTATACGATAGGATCTCTCACCGTTTTGATGCTTGCTGTCTTCTTCTTGATGTAAGTAAAGTTCACAAGGGTCCTGGACTTGTACGTCTGCAAAAACAACTCCTCCGTGAAACACTGCAGGAAGATATAGAGATATGGGAAGATCACAGGGGAACCAATTTAATAAGCACTAGGCTTCACCACCTTAAAACTCTTATTGTTGTTGACAATGTTGATCATGCTGATCAATTGGAGAAACTGGTTGGAAAGTCCTCATGGTTTGGGCCGGGAAGTAGGATCATCATAACAACTAGAGATTTGCACATCTTAACCAGGCATGGAGTGGATGAAGTTTATGAGGTTAAACTACTGAATGAAGATGAAGCTCTTCAACTTCTCTGTAGAAAAGCCTTCAAACAAGATGATCCCTTGAGTGACTTTAAAGCGATGACTCATAGTCTGCTACAATATGCTAAAGCCCTTCCACTGGTAATCAAAGTGTTAGGTTCCTTTATGTATGGGTTGGAAATATCAGAGTGGATTGCTCAGTTAGAAAGACTGAGAGAAAATCCTGACCAAGAGGTTATGGGAGTTCTTGAAACAAGTTTTGTTCGGCTTGAGAAGAAGGACAAGGATATATTTGTAGACATTGCTTGTTTCTTCAAGGGAGGAGACGAGAACTATGTGACAAAAATTCTAGAACATTGTGGATTCAATCCTAAAATTGGACTTAGGGTTCTCCGTGACAGATCACTTCTGAACATTGTTAATGGAACATTCTGGATGCACGATATGCTGCAAGAACTGGGATGGAAATTCGCAAGGGGAGAATTTCCTGATGAGCCAGCAAAGTGGAGTAGGCTGTGGTCATACAAAGATATTCAAACCGTAAAGACAGGAACGGAAAAAGTTGAAGCCATCGTCCTGAGCCCGGAAGATCTGCAAGAGACGCCATTGAAGGCTGAGGCTTTATCACAAATGAACCGCCTCAGATTAATCATATTCCCTGATAATGTGAAATTTTCAGGAAACCTCACTAGCCTGTCCAACGAGTTACGAGTTCTTTCATGGCATAAATTTCCTTTCAGCTCTTTGCCATCAGGTTTTGAACCAGATAAACTTGTCGAGCTGATCATGCCTGACAGCAACGTAAGACAACTATGGGAAGGCGAAAAGAGAATGGTCTGTTGTTGGGTAACGGTAGCTAGCTAA 1890 0.4175 MNYPSFPGSSSSRRTWKYEVFLSFRGEDTRNSFAGHLFSALQRKGIFTFKDDKRLEKGEPIKPELLKAIEQSRISFVVFSQNYADSSWCLDELAKISEGISEPGYFIVPIFFDVDPSDVRRQSGKYREFFDKHERDFCDNIDKVQRWRIALTQVASLAGYDVRAKSESDVIDEIVTDAIRKLGHRFSSLADDLVGMQSRAEAFENLLDLESEDVRKVGMWGMPGVGKTTLAAVVYDRISHRFDACCLLLDVSKVHKGPGLVRLQKQLLRETLQEDIEIWEDHRGTNLISTRLHHLKTLIVVDNVDHADQLEKLVGKSSWFGPGSRIIITTRDLHILTRHGVDEVYEVKLLNEDEALQLLCRKAFKQDDPLSDFKAMTHSLLQYAKALPLVIKVLGSFMYGLEISEWIAQLERLRENPDQEVMGVLETSFVRLEKKDKDIFVDIACFFKGGDENYVTKILEHCGFNPKIGLRVLRDRSLLNIVNGTFWMHDMLQELGWKFARGEFPDEPAKWSRLWSYKDIQTVKTGTEKVEAIVLSPEDLQETPLKAEALSQMNRLRLIIFPDNVKFSGNLTSLSNELRVLSWHKFPFSSLPSGFEPDKLVELIMPDSNVRQLWEGEKRMVCCWVTVAS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4653g00046 629 Pfam NB-ARC domain 210 414 IPR002182 GO:0043531
Pral4653g00046 629 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Pral4653g00046 629 Gene3D - 349 433 IPR042197 -
Pral4653g00046 629 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Pral4653g00046 629 PRINTS Disease resistance protein signature 216 231 - -
Pral4653g00046 629 PRINTS Disease resistance protein signature 291 305 - -
Pral4653g00046 629 PRINTS Disease resistance protein signature 384 398 - -
Pral4653g00046 629 Pfam Leucine Rich Repeat 599 618 IPR011713 -
Pral4653g00046 629 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Pral4653g00046 629 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 613 IPR044974 GO:0006952
Pral4653g00046 629 Gene3D - 185 345 IPR027417 -
Pral4653g00046 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 443 IPR027417 -
Pral4653g00046 629 SMART till_3 17 157 IPR000157 GO:0007165
Pral4653g00046 629 Pfam TIR domain 17 192 IPR000157 GO:0007165
Pral4653g00046 629 Gene3D - 14 184 IPR035897 -
Pral4653g00046 629 SUPERFAMILY "Winged helix" DNA-binding domain 420 521 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4653g00046 Pral-Chr4653 260709 263120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4653g00046 3 622 WRKY Transcription Factor Family AT4G12020 30.538 2.42e-82 281