Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4651g00048 ATGCTTCTGCAACAAAAGATGGATGAAGCAGAAATTTCAAGTGGTTTTTCTCATCAGAACCCAACTGATCATCTTGAATCCAGTAATAATATTGTTCCTCCAGTTTTGAAGAGGAAGAGAAACCTTCCAGGAAATCCAGATCCTGAAGCAGAGGTCATAGCCTTGTCGCCGAAGACACTGATGGCCACCAACAGATTCTTGTGTGAAATATGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAGCTCCATCGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAGAGGACAAGCAAAGAACCGAAGAAGAGAGTGTATGTGTGCCCTGAAAAGACTTGTGTCCACCACGACCCTTCAAGGGCTCTGGGAGACTTAACAGGGATAAAGAAGCACTTTTGCAGAAAGCACGGAGAGAAGAAATGGAAGTGCGAGAAGTGTTCAAAGCGATACGCTGTCCAGTCAGACTGGAAAGCCCACTCTAAGACCTGTGGCACCAGAGAATACAAATGTGATTGTGGGACTGTCTTTTCACGGAGAGACAGTTTCATAACCCACAGGGCATTCTGCGATGCCTTAGCAGAAGAGACGGCAAGAGTGAATGCAGCATCTACAGTGAATAACTCCTTTCTGGGTTACAACATCATGGAAAATTCCCAAGGGCCTGCCATAAGCATGACCACACATTTTCCTTCCATTTTCAAGCCAATTTCAAACACTGGTGTTGAAACAAAGCATCAAGCACCTGGGGGA 753 0.4542 MLLQQKMDEAEISSGFSHQNPTDHLESSNNIVPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPKKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASTVNNSFLGYNIMENSQGPAISMTTHFPSIFKPISNTGVETKHQAPGG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4651g00048 251 Gene3D Classic Zinc Finger 100 190 - -
Pral4651g00048 251 FunFam protein indeterminate-domain 12-like 45 113 - -
Pral4651g00048 251 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 217 IPR031140 -
Pral4651g00048 251 SMART c2h2final6 142 162 IPR013087 -
Pral4651g00048 251 SMART c2h2final6 107 137 IPR013087 -
Pral4651g00048 251 SMART c2h2final6 66 88 IPR013087 -
Pral4651g00048 251 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pral4651g00048 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pral4651g00048 251 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pral4651g00048 251 MobiDBLite consensus disorder prediction 1 48 - -
Pral4651g00048 251 Gene3D Classic Zinc Finger 62 89 - -
Pral4651g00048 251 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pral4651g00048 251 MobiDBLite consensus disorder prediction 10 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4651g00048 Pral-Chr4651 232501 234214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4651g00048 33 204 IDZ Gene Family AT1G03840 91.860 2.24e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4651g00048 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4651g00048 K25870 - gmx:100790620 401.364