Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4651g00029 ATGAGCAGCGTCTGTGCTGATCAGCACAAGTTTCTTCCCTTCTCTCCCAAGAAATCCCTCCCCGACATCCCTCCCCGTAAGCTCCTCACTCGCCGTTCTCCCGCCTCCGCCATCCACGACCCCGACATGTTCCCTGACTCCCCCCGCTTTTCCTCCTCCGACGAGGCTTTCCTTCACAAGTTTCTCCCTCGAAACAACCTCAACGTCGACTCTGACGACGATGATTCTGATCCCTATTCCTCTGACCACTTCCGCATGTACGAGTTCAAGGTCCGCCGCTGCACCCGCAGCCGCAGCCACGACTGGACTGACTGCCCCTTTGCTCACCCCGGTGAGAAGGCCCGCCGCCGCGACCCCCGCCGTTTTCATTACTCCGGCACTGTCTGCCCCGAGTATCGACGCGGTGGGTGCAGCCGCGGTGATAGCTGCGAGTTTGCGCACGGCGTGTTCGAGTGTTGGCTTCACCCTGCCAGGTACAGAACTGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAGGTGTGTTTCTTCGCTCACACACCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCAGTCCCATAATTCTTCATCTGCCGACCATCACGCTTCGTGCAAGAATCATAATAAATTCCTGAACCCCACCTCTGGATCCAACAATTGCTGCTTGTTTTGTCATCATTGCGCTGCTGGTTCTACCTCATCTCCAACATCCACGCTGTTTGGAATGTCCCATATGTCACCGCCACTTTCTCCGTCGTCTTCCCCTGTTTCACCGCCTCTTTCACCGGTGAAACGCCGGTCGATTGTGAATGGAGTGTCACCAATCTCTCGATATTGTGACAGACTTGCAGGGTGCGAGACATTGTCATCTAGTAGGCTGATGAATAGTCATGGGCTGGCGAGCTATAAGGATGCTCTCACTGAATTAATGAGCTCCTTGGAGGGTCTGAATTTCATTGAAGCCAACGCTTCGCCTGTTTCTGCCACAAAATCCCTAAATCTTCCATGGCTTGACATGTCTTTGATTAACTGTGAAGACCAGCAGCAGCAGTTCATTCTTTCACCCGGCGCTTCTTTTAGCTTTGAAGATCAGCAGCAACAGTTTATTCTTTCGCCATCTGCTCATAGTACTCCAACAACATCTTCTGTTTCTTCAAGCTTCTCCAATGGGAAATTGTATCCAAACAGCACATATCTCAGCAGTGAAAGCAAGGCTGTTTCAACTGATAACGGGTCCTCTTGCTCAGCCCCAGATCTCGGATGGGTCAACGAGCTGCTGATGTAG 1287 0.5198 MSSVCADQHKFLPFSPKKSLPDIPPRKLLTRRSPASAIHDPDMFPDSPRFSSSDEAFLHKFLPRNNLNVDSDDDDSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSQSHNSSSADHHASCKNHNKFLNPTSGSNNCCLFCHHCAAGSTSSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKRRSIVNGVSPISRYCDRLAGCETLSSSRLMNSHGLASYKDALTELMSSLEGLNFIEANASPVSATKSLNLPWLDMSLINCEDQQQQFILSPGASFSFEDQQQQFILSPSAHSTPTTSSVSSSFSNGKLYPNSTYLSSESKAVSTDNGSSCSAPDLGWVNELLM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4651g00029 428 PANTHER UNKEMPT FAMILY MEMBER 36 427 IPR045234 -
Pral4651g00029 428 FunFam Zinc finger CCCH domain-containing protein 66 81 149 - -
Pral4651g00029 428 Gene3D - 124 187 - -
Pral4651g00029 428 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Pral4651g00029 428 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Pral4651g00029 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 148 IPR000571 GO:0046872
Pral4651g00029 428 MobiDBLite consensus disorder prediction 13 47 - -
Pral4651g00029 428 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4651g00029 Pral-Chr4651 177624 178910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4651g00029 75 185 C2H2 Transcription Factor Family AT5G07500 68.468 1.15e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4651g00029 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4651g00029 K23047 - qsa:O6P43_028831 481.485