Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4651g00022 ATGAAGGAATTAGTGATGGGAACCACACTTCTTGATAGGAGAAGAGAAGCGGGGAACTATATTGAGACAGTTCATATATGGTTGAAGAAGTTTGTGTCAAAATGCGCCCTTGTTATATTTGAAATTGAGTGGCTCTTTTCAACGAAAGATGAAAGTGATCAATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACATGGAATTTTTTAGATACTGCAAATGGCTCTTCAAGATTTTCAGACATCAGGAAAACAAATGGCAATTCGGTAATTGAATTATTTAGTACGCCCACAAAAATAACTGGTGTGCATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAGTACAATGTTGGTGGTGCTCAAATCAGAGTGGAAGGTGTATATATATGGCCTTTTAAACAGCTTCGAATGGTAGCTAACAGTGGGAAAGAGGGAAATTCAAATCAGGATGAAGATTATATCTTATCTAATCCATATCATCTGCTTGGATTGTTCTCATCTCAGGTATTCCAAGAATCCTCACGAGATAAGACACGGAGAAATAAACATTCTCCATTATATGACATGGAGAAACATTGCAATATTGAAATTGCAGGACAGTTTTCCCGCCTATCAGCATCAAAGAATGATGGGGATCATGATCGATTCCACCTAGGAGGGTTGATGGAGAGTCCCTCAGTGGACGATGATGGGGATTGCTTTTCACCTTTAATGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACCTTTATCTCTTTCTTGCAAGTTCTTCTGTTGATTCGGCAAATGGAACATAGCAACACTCAATCTGGAGCTGCTAAGGTTTCAATAATAATGATTGGCCAACAGGCTATAATGGATGCTTACCTTTGCCTATTACATCTGACTGCAGGAATACTAGTTGAATCCTTATTTAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGGTATCTCCTTGCGATATGGAAGGCAAATCGGCCTCTGAGTAATGGAGAAGGCTGGGAGACAATGAGGCGTGAGCTTTCATCTTTATACATGCGTTTCTATGGGATCCTGGTGGGAGGAATTCTGCTTATGTACCAGTTCCATAATTATTTGAGACCTATACTTCTTCTCATGTACTCATTTTGGATACCTCAGATAATTACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATTTTAGGGATAACTGTCACTCGCCTAGCAGTGCCATTATACATATTTGGTTGCCCCAAAAACTTCATGCGCATTGAACCGGACAAGAGCTGGTGTTTGTGTTTGGCTGTATTTATTGGACTTCAGGCTACAATTCTTCTACTTCAGAACTATCTTGGTTCCCGCTGGTTCATCCCTCGTCAGATTCTGCCCGAGAAATACAGCTATTACAGGAGGTTTGGTCAAACTACAAATCATGCTACTGATTGTGTTATTTGCATGACGGTTATTGATCTTTCTCAGCGATCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATGTAAAGATGGAGTGCCCTACATGCCGGCGCCCTCTGCCGCCTGCTTAG 1674 0.4014 MKELVMGTTLLDRRREAGNYIETVHIWLKKFVSKCALVIFEIEWLFSTKDESDQFSQWNITGTYKGTWNFLDTANGSSRFSDIRKTNGNSVIELFSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPFKQLRMVANSGKEGNSNQDEDYILSNPYHLLGLFSSQVFQESSRDKTRRNKHSPLYDMEKHCNIEIAGQFSRLSASKNDGDHDRFHLGGLMESPSVDDDGDCFSPLMLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSSLYMRFYGILVGGILLMYQFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAVPLYIFGCPKNFMRIEPDKSWCLCLAVFIGLQATILLLQNYLGSRWFIPRQILPEKYSYYRRFGQTTNHATDCVICMTVIDLSQRSNDCMVTPCEHFFHSGCLQRWMDVKMECPTCRRPLPPA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4651g00022 557 ProSiteProfiles Zinc finger RING-type profile. 507 551 IPR001841 -
Pral4651g00022 557 SMART ring_2 507 550 IPR001841 -
Pral4651g00022 557 SUPERFAMILY RING/U-box 506 556 - -
Pral4651g00022 557 CDD RING-H2_TUL1-like 501 556 - -
Pral4651g00022 557 Pfam Ring finger domain 506 551 IPR001841 -
Pral4651g00022 557 SMART ringv_2 506 551 IPR011016 GO:0008270
Pral4651g00022 557 PANTHER RING ZINC FINGER PROTEIN 108 556 - -
Pral4651g00022 557 FunFam E3 ubiquitin-protein ligase, putative 493 557 - -
Pral4651g00022 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 557 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4651g00022 Pral-Chr4651 147310 154364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4651g00022 502 557 C3H Transcription Factor Family AT2G35420 37.500 1.02e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4651g00022 K23788 - cave:132181383 940.258