Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4651g00019 ATGTCACTGCGCGCTTTCAAGGAGACTCTCAAGCCGTGCACAAGCCAACCGTCTTCTCCATCGGTTAGCCAAGCGCAATCTTCGATTTTCCGAGATTCCGACTTCCCAATCCCGAGGAAACCCCCAAAGTCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTAATTCAGCCTCGCAATTCACCTAAGCGAGAAAGGGAACAGAAATGTAGTGACGTCGTGGATGATGATGATGAGGAGGAGGAGGAAGAGGAGGAGGAGCCAGAATTGAAGAGGGAAAAATTCGGTAGAGCTAAATTGTGTCAATTTCAGTTCGATCATACTGGACCCTTTGAGCCTCTGGTATTGTCTTCGGATGGAGAAGTTCCAGTAGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGAGCGGGAGTGAAGTTTCTGTATAGTTTGTATAAAAACAATCATGGAGGCATTCTTGGCGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATGGAGAATATATGCCAAAGGAAAATCAAGCAATGAAAAGAGACCCTGTATTAATAATTTGCCCAACTTCTGTTATCCATAACTGGGAGAGTGAGTTCTCTAAATGGGCAAACTTTAGTGTTTCCATTTATCATGGTTCAAACCGAGATCTAATATATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGAATTCATGGTAGCATCTTGTCAGAAATCAAATGGGATATTGTGGTCATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCAAAGCTCTACAGAGCATGTTTAGAAATAAAAACCCAAAGACGTTTTGGTCTTACTGGCACGATCATGCAAAATAAGATCATGGAACTGTTTAATCTCTTTGACTGGGTTGTTCCAGGATCCCTGGGAACACGGGAACATTTTCGAGATTTCTATGATGAACCCCTCAAGCATGGTCAGAGGTCAACTGCTCCGAAGAGGTTTGTTGATATTGCCAACAAGCGAAAACTGCACCTTGTTACAGTTCTTCAGAAATATATGCTAAGAAGGACGAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAGGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTACAGAAACGGGCATATCGGAGAATGTTACAACTTCCTGACATCCAATGCCTCATTAATAAGGATTTGCCTTGTAGCTGTGGAAGCCCACTCACACAAGTTGAATGTTGCAAGAGGATTGTATCAAATGGAATCATTTGGCCTTACCTCCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATCAAGCCAAACCCCAAAGATGACCCAGAGAAACAAAGAAAAGACGCAGAGTTTGCTGCTGCTGTCTTTGGCCATGATATAGATTTGGTGGGTGGGAACACGCAGAATGAGAATTTTATGGGTCTAAGTGATGTCAAACATTGTGGAAAAATGAGAGCACTTGAAAAACTTTTGTTTTCATGGATCTCTCAGGGTGATAAAATACTTGTGTTTAGCTATTCTGTAAGAATGCTTGACATATTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTTCTCAAGGCTTGATGGATCTACTCCAACTAATTTACGTCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACAGGTCGTTCCGATTTGGGCAGAAGCGACATGTTGTGGTATTCCGGCTTCTTGCAGCTGGCTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTGTCAAATATTGCTGTCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGGTCCAGTTACTCGTTAGTATTCATGCAGGACTGCAAGGAATTTCAGGGGGAACTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGACAAGCTTTTTACAAGCGAACTAGTTCATGTGCATGATAAGGAAGGAAAAGAGCACAGGCGTAGAAGAGAGCGAGGAGAAAAACTTGTTCCTTCAGAAGAAGCTGATATATTAGTATCTGGTTCTGGGAGCAGGTTATCAACCAATTATAAGAGGACTTCAACTAGTGAAGCAGATCTGGAAGATCTTGGCATTGTCTATGCTCATCGGAATGAAGACATAGTCAACTCGGTTCCGCCATTCGAGGGAAGACAGACCACCATCCATCACAGTGAAAGCCAAAGCATGCCTCTTGTCCAGGGAGAAGAACCAGAGTTTGCAGTTAAAAAACAGAAAGTTCCCATCATCAATGAGAGGAAGAGAGCCCAATTTAGGCTGCTCGCTCGGTCTAGAGGCATGGGAGAGCTTGAATTTAGCATGTGGTTATTATCAGCGACTCCAAGAGAAAGAGAGGAAGTGCTTCAAGAATACAGGACTACAGGAGGAAGGAGATACCTTGAAGCCGAAGGGTACAGTCTTCCTCTTGCCAGTGAAGGCTGA 2685 0.4331 MSLRAFKETLKPCTSQPSSPSVSQAQSSIFRDSDFPIPRKPPKSSLTQQLRRLQDPLAPPLIQPRNSPKREREQKCSDVVDDDDEEEEEEEEEPELKREKFGRAKLCQFQFDHTGPFEPLVLSSDGEVPVVPASINCRLLEHQRAGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYMPKENQAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGSNRDLIYDKLEAHGVEILITSFDTYRIHGSILSEIKWDIVVIDEAHRLKNEKSKLYRACLEIKTQRRFGLTGTIMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVDIANKRKLHLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQRKDAEFAAAVFGHDIDLVGGNTQNENFMGLSDVKHCGKMRALEKLLFSWISQGDKILVFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGSSYSLVFMQDCKEFQGELFGICNLFRDLSDKLFTSELVHVHDKEGKEHRRRRERGEKLVPSEEADILVSGSGSRLSTNYKRTSTSEADLEDLGIVYAHRNEDIVNSVPPFEGRQTTIHHSESQSMPLVQGEEPEFAVKKQKVPIINERKRAQFRLLARSRGMGELEFSMWLLSATPREREEVLQEYRTTGGRRYLEAEGYSLPLASEG 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4651g00019 894 SMART ultradead3 135 330 IPR014001 -
Pral4651g00019 894 Pfam SNF2-related domain 154 412 IPR000330 GO:0005524|GO:0140658
Pral4651g00019 894 MobiDBLite consensus disorder prediction 1 98 - -
Pral4651g00019 894 MobiDBLite consensus disorder prediction 78 94 - -
Pral4651g00019 894 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
Pral4651g00019 894 SMART helicmild6 557 640 IPR001650 -
Pral4651g00019 894 Gene3D - 384 703 IPR027417 -
Pral4651g00019 894 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 322 IPR014001 -
Pral4651g00019 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 372 IPR027417 -
Pral4651g00019 894 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Pral4651g00019 894 PANTHER SNF2/RAD54 FAMILY MEMBER 16 809 - -
Pral4651g00019 894 CDD SF2_C_SNF 522 651 - -
Pral4651g00019 894 Gene3D - 122 371 IPR038718 -
Pral4651g00019 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 682 IPR027417 -
Pral4651g00019 894 MobiDBLite consensus disorder prediction 9 31 - -
Pral4651g00019 894 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 119 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4651g00019 Pral-Chr4651 134073 139991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4651g00019 582 683 RAD5 or RAD16-like Gene Family AT3G16600 37.255 3.07e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4651g00019 SNF2_N 5.6e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4651g00019 K20098 - gmx:100781003 1287.71