Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4650g00008 ATGGCCTTAGATTTGCATTATGAGGATTTTGCAGCGCAAACTGATGCCTTTGGAGATAAATCTTGTGTGGAAAAGTGGAATTCTGCCCCTGAAGCCATTGCAGACTCTGATAGGGATGCTCCTGGTGACTTCGAATGCAATATCTGCCTGGATTCCTTGCATGATCCAGTATTAACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAGGTGGCTCCATTTTGGTAATGCTTCTTCTCAAAACATAGTTCAGGAAAGGACATTCTGCCCAGTATGCAAATCAGAAATCTCTCAATTCTCCCTCGTTCCCGTATATGGACGTGTCCAAATCACAAAACCTTCCAAGGGTAAGTCTCCCAATGTAGGGACTGCCATACCTCCAAGACCTCGCGGTCCCGTGTCAGTTCATGACTTTGCAAGATCATGTAACAGCATAGCTGCAGCTCATGACTCGTCAAGATCATATAATACCGCAAGTGCTTCCCGGCCAGCTACGCAATTTCATCAACGCCCTTATGCTTATCACACTCAACAGTTGAATGCATTTGACACAACACATGGAGTTTTTGGTCAGATGATATATGCGAGAGTCTTTGGTAATCAGTTGACAAACGTGTACACTTCTAATTCATATGGTCTCACGGGGAACAACAATCGGAGGGTGAGAAGGCATTTGATGCTAGTGGATAAATCACTCAGCAGAATCTGTTTTTTCATCTTCTGCTGCACAGTTGTGTGTCTTCTCTTATTCTGA 759 0.444 MALDLHYEDFAAQTDAFGDKSCVEKWNSAPEAIADSDRDAPGDFECNICLDSLHDPVLTLCGHLYCWPCIYRWLHFGNASSQNIVQERTFCPVCKSEISQFSLVPVYGRVQITKPSKGKSPNVGTAIPPRPRGPVSVHDFARSCNSIAAAHDSSRSYNTASASRPATQFHQRPYAYHTQQLNAFDTTHGVFGQMIYARVFGNQLTNVYTSNSYGLTGNNNRRVRRHLMLVDKSLSRICFFIFCCTVVCLLLF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4650g00008 252 SUPERFAMILY RING/U-box 39 108 - -
Pral4650g00008 252 SMART ring_2 46 94 IPR001841 -
Pral4650g00008 252 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Pral4650g00008 252 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Pral4650g00008 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral4650g00008 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 123 IPR013083 -
Pral4650g00008 252 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4650g00008 Pral-Chr4650 41958 44418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4650g00008 39 252 C3H Transcription Factor Family AT4G28270 36.530 3.49e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4650g00008 K10666 - gmx:100780643 248.825