Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4650g00007 ATGCCACGTCAGGATATGTTTATCCGTGTGCGCGTCATTTTCGTTATATATAAAGCTCCGTCCTTTCCCTCTTTCCACTCGTCCTCTGCATTTCTCATTTCTTTCTTTTCGTTCTGCTCACTGCATTTCGTGCTTTCTGGGTTCTGGCCTCTCTTCCTCGCCCCTTCTTTCCAACTGCTGCTTCGGCCATCAAGCCCTTCACTGTTTCTTTTTATTCTGACATTCGAGGGAACGCATTGTGAAACAGAAACAATGGCCTTAGATTTGCATTATGAGGATTTTGCAGCGCAAACTGATGCCTTTGGAGATAAATCTTGTGTGGAAAAGTGGAATTCTGCCCCTGAAGCCATTGCAGACTCTGATAGGGATGCTCCTGGTGACTTCGAATGCAATATCTGCCTGGATTCCTTGCATGATCCAGTATTAACTCTTTGCGGTCATCTCTACTGCTGGCCCTGCATTTACAGGTGGCTCCATTTTGGTAATGCTTCTTCTCAAAACATAGTTCAGGAAAGGACATTCTGCCCAGTATGCAAATCAGAAATCTCTCAATTCTCCCTCGTTCCCGTATATGGACGTGTCCAAATCACAAAACCTTCCAAGGGTAAGTCTCCCAATGTAGGGACTGCCATACCTCCAAGACCTCGCGGTCCCGTGTCAGTTCATGACTTTGCAAGATCATGTAACAGCATAGCTGCAGCTCATGACTCGTCAAGATCATATAATACCGCAAGTGCTTCCCGGCCAGCTACGCAATTTCATCAACGCCCTTATGCTTATCACACTCAACAGTTGAATGCATTTGACACAACACATGGAGTTTTTGGTCAGATGATATATGCGAGAGTCTTTGGTAATCAGTTGACAAACGTGTACACTTCTAATTCATATGGTCTCACGGGGAACAACAATCGGAGGGTGAGAAGGCATTTGATGCTAGTGGATAAATCACTCAGCAGAATCTGTTTTTTCATCTTCTGCTGCACAGTTGTGTGTCTTCTCTTATTCTGA 1011 0.4481 MPRQDMFIRVRVIFVIYKAPSFPSFHSSSAFLISFFSFCSLHFVLSGFWPLFLAPSFQLLLRPSSPSLFLFILTFEGTHCETETMALDLHYEDFAAQTDAFGDKSCVEKWNSAPEAIADSDRDAPGDFECNICLDSLHDPVLTLCGHLYCWPCIYRWLHFGNASSQNIVQERTFCPVCKSEISQFSLVPVYGRVQITKPSKGKSPNVGTAIPPRPRGPVSVHDFARSCNSIAAAHDSSRSYNTASASRPATQFHQRPYAYHTQQLNAFDTTHGVFGQMIYARVFGNQLTNVYTSNSYGLTGNNNRRVRRHLMLVDKSLSRICFFIFCCTVVCLLLF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4650g00007 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 98 334 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral4650g00007 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 207 IPR013083 -
Pral4650g00007 336 SMART ring_2 130 178 IPR001841 -
Pral4650g00007 336 SUPERFAMILY RING/U-box 123 192 - -
Pral4650g00007 336 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Pral4650g00007 336 Pfam Zinc finger, C3HC4 type (RING finger) 130 178 IPR018957 GO:0046872
Pral4650g00007 336 ProSiteProfiles Zinc finger RING-type profile. 130 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4650g00007 Pral-Chr4650 41958 44578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4650g00007 123 336 C3H Transcription Factor Family AT4G28270 36.530 3.85e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4650g00007 K10666 - gmx:100780643 248.825