Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4649g00004 ATGGATCGCAACTTTGTCTCAGCCTATTCTGGGCCCGATGACTCCTCCTCCTCCTCCTCCTTGGACCCAATGTTTTCCGGCGTCAGTCTTCAGTCCATTCTCAGCCTCAATCCATCCGTCTTCTCTGATTACGCCGCCGGCACTGGGCTTCCCAGTCTTGCTTTCCTACCAGATGATTCCCTGTCTCTGAATCTGCATGGTGAAGCTGCTCAGGGCTTTAACAGTGATGAGGACCACATGGCAGGGACAAGAGAGAAGAAGCCCACTATCGTGCCCAAACCTGAGCCAGGTCTCTTCGAATACGCTGCCACCTGTGGGATCACTTCTCACCCCTTCGACTTCTTCTCCGGCTCCAGTCACTGCCCTACCAGCCTCTACGATTCATCAACCTTCAACATTCTCCCTCAACTCCATTCCATCGAGTCCTTTCCTCATAAGCGTCCCCGCTTCGACTCTCTCGCTTCCACTCCCAACACCATGCCGGCGGCGCCCCAACACAACCCCGACCCTGCCGCTGTTGGTAACAACTTCTTTGCCATCGCTCCTGCGCACAACACCAAACCAGCCTCTTCTTCGCTGGATGCTCCCTTCGGTGAAAAATCCTCTGCGGCGATTCCTCAAAGCAACCTGGCTCGTCAGCGACGGCAGAAGCTCAGCGATAAGACTCGGTGCTTGCAGAAATTGATGCCGTGGGACAAGAAGATGGACCAAGCCACGTTGCTGGAGGAGGCGTACAAGTACGTCAAATTTCTGCAGGCCCAGTTCAACGCTCTCCAATCCATGCCCTCCGATTCGCCGCCTTTTCTGTCCCACTGTGGTGCTTCGCATTCCCAATCCTCCGTTCAGAACAGCGCCGTATTTGGGGATTTGGAGAGGTTAAATCGCAACCAGGTGTTGCAGGTGCTGGTGAACTCGCCTGTGGCTCAAACAAGGCTTTACTCCCAAGGCTTCTGCGTGTTCTCTGTGGAACAGTTAACTCTGCTGAGCAACATGACAGGGAAGAGGCTTCTTCTGCCACAGATGATGTCTGATAACGCTTCTTCAAAATCCTTCCTTAAGTGA 1062 0.5386 MDRNFVSAYSGPDDSSSSSSLDPMFSGVSLQSILSLNPSVFSDYAAGTGLPSLAFLPDDSLSLNLHGEAAQGFNSDEDHMAGTREKKPTIVPKPEPGLFEYAATCGITSHPFDFFSGSSHCPTSLYDSSTFNILPQLHSIESFPHKRPRFDSLASTPNTMPAAPQHNPDPAAVGNNFFAIAPAHNTKPASSSLDAPFGEKSSAAIPQSNLARQRRQKLSDKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFNALQSMPSDSPPFLSHCGASHSQSSVQNSAVFGDLERLNRNQVLQVLVNSPVAQTRLYSQGFCVFSVEQLTLLSNMTGKRLLLPQMMSDNASSKSFLK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4649g00004 353 MobiDBLite consensus disorder prediction 1 21 - -
Pral4649g00004 353 Gene3D - 205 264 IPR036638 GO:0046983
Pral4649g00004 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 261 IPR036638 GO:0046983
Pral4649g00004 353 SMART finulus 208 257 IPR011598 GO:0046983
Pral4649g00004 353 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 127 329 IPR045843 GO:0003700|GO:0006355
Pral4649g00004 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Pral4649g00004 353 Pfam Helix-loop-helix DNA-binding domain 212 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4649g00004 Pral-Chr4649 20952 22800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4649g00004 214 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 44.538 3.47e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4649g00004 HLH 0.0003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4649g00004 - - pcin:129314920 510.375