Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4648g00025 ATGGAGAAAGGAAACTCTAAGAAGAAAGCATCAACTCTCTCTCTGGAGCAATTCATCTCACTCATGGCTCCTCTTATTGATTTGGAAAAGGAAACTGAGATATCAACCTCAATCACTTCAGGCGCGTCGAGAAGTTTGGATACTGCTCAGAAAAGGGGCTCGACAATCCTCAATTTGAAATGTGTTGATGTCCAGACGGGGCTTATGGGGAAATCTCTTATTGAGTTCCAATCCACCAAAGGAGACGTTCTTCCTGCACACAAGTTCAGTACACATGACGTTGTTGTTTTAAAACTCAGCAAGGCTGATTTAGGTTCCCCTGCTCTTGGACAAGGTGTAGTTTACCGCTTAAAGGACTCCTCAATAACAGTTGCCTTTGATGATATACCAGAAGATGGTTTAAATAGTCCCCTCAGGCTGGAGAAAGTGGCAAATGAGGTGACATACCGCAGGATGAAGGATGCATTGGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTGCTGACCTAATTCCTGTCTTGTTCGGAGAGAGGCCACCAACAGTGTCCAAGAAGGATGTGTCATTCACTCCATTTAACCCCAACCTCGATCACTCTCAGAAAGGTGCAATCTCGAAAGCCCTATCGTCAAAGAATGTATTTTTGCTTCATGGGCCTCCTGGAACGGGAAAAACGACCACAGTGGTGGAAATCATATTACAAGAAGTGAAACGTGGATCAAAAATTCTTGTTTGTGCCGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTTGTTCCACGTAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTTGACAGTGCACTGGATGCTCAGGTACTTCGAGGAGACAATAGTTCACTTGCAAACGACATTAGGAAGGAAATGAAGGCATTAAATGGAAAGTTGTTGAAAACTAAAGACAGAAATACAAGGAGGGACATTCAGAAGGAACTGCGAACTCTGTCCAGAGAAGAGCGGAAAAGACAACAGCTTGCTGTAACAGACGTAATTAAAAGTGCTGATGTGATATTAACCACTTTGATCGGGTCTTTTTCTAAGAAGTTGGATAACACTTCATTTGACTTGGTAATTATTGACGAAGCTGCTCAGGCACTTGAGGTAGCTTGCTGGCTACCGATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTGCCCCCAACCATTCAAAGTGTTGAGGCCGAGAAGAAAGGATTAGGACGAACCCTCTTTGAACGACTTGCAGATATGTATGGAGATGAAGTCACATCCATGCTTACTGTCCAGTACCGCATGCATGAACTTATCATGGAGTGGTCTTCTAAAGAGCTCTACAACAGCAAGGTCAAAGCCCATGCAAGTGTTGCTGGACATATGCTGTTTGATCTTGAGGATGTGAAGAGGACCTCTTCAACTGAACCGACACTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCATGAATGAAGGCGAAGCTGAAGTTGCCATGGCCCATGCGAAGAGACTTGTGCAGAGTGGTGTTCTTCCTTCTGATATTGGAATTATTACCCCGTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGAACTCCCTGAAGGATCTCGAAATTTCAACAGTTGATGGATTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCTAATTCAAAAAAAGAGGTGGGCTTTCTAAGTGATCATCGCCGAATGAACGTGGCTGTGACGCGGGCGAGGAGGCAGTGCTGCCTTGTCTGTGACACCGAAACTGTCAGTTCTGATGGATTCCTAAAGCGATTGATTGAGTATTTTGAAGAGAATGGGGAGTATCAGAGTGGTTCTGAGTATCAGAATGAATAG 1944 0.4408 MEKGNSKKKASTLSLEQFISLMAPLIDLEKETEISTSITSGASRSLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFTPFNPNLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILVCAASNIAVDNIVERLVPRRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSSLANDIRKEMKALNGKLLKTKDRNTRRDIQKELRTLSREERKRQQLAVTDVIKSADVILTTLIGSFSKKLDNTSFDLVIIDEAAQALEVACWLPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADMYGDEVTSMLTVQYRMHELIMEWSSKELYNSKVKAHASVAGHMLFDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTMNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEENGEYQSGSEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4648g00025 647 Gene3D - 41 143 - -
Pral4648g00025 647 Coils Coil 298 318 - -
Pral4648g00025 647 Gene3D - 443 647 IPR027417 -
Pral4648g00025 647 FunFam DNA-binding protein SMUBP-2 41 143 - -
Pral4648g00025 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Pral4648g00025 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 19 645 - -
Pral4648g00025 647 Pfam AAA domain 420 616 IPR041679 -
Pral4648g00025 647 NCBIfam IGHMBP2 family helicase 345 640 IPR004483 GO:0003677|GO:0005524
Pral4648g00025 647 CDD SF1_C_Upf1 445 633 IPR047187 -
Pral4648g00025 647 CDD DEXXQc_SMUBP2 196 444 - -
Pral4648g00025 647 SMART AAA_5 211 429 IPR003593 GO:0016887
Pral4648g00025 647 SMART ultradead3 193 444 IPR014001 -
Pral4648g00025 647 Gene3D - 24 427 IPR027417 -
Pral4648g00025 647 FunFam P-loop containing nucleoside triphosphate hydrolase 443 647 - -
Pral4648g00025 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 622 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4648g00025 Pral-Chr4648 125603 132074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4648g00025 170 380 Core DNA Replication Machinery Family AT1G08840 27.488 1.26e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4648g00025 - K19036 gmx:100810545 1133.24