Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4648g00024 ATGTGCTGTGATTTGGAGTGGTTAAAGCTAGCACCGTCTCCAGCAGCGTCTTTAATTTTGTCAAGCAACACTCCAACTCGAAACGGGAAGATGAATCACTTGACTGTGGAAACTGAAGATAGTTTTGCAAACCTGCTTGACCTTGCAGCCAATAATGACGTTGAGCATTTCAAAAGATCAATTGAACGTGATCCTTCCTCTGTTGACGAGGTTGGACTGTGGTATGGTCGCCAGAAGGGCTCAAAGCAAATGGTCAACGAGCACCGGACACCTTTGATGGTGGCTGCTACTTATGGTAGCATTGATGTTATCAGGGTGATACTTTCATCATCTGATGCAGATATTAATCGATCATGTGGGCTTGACAAAAGCACAGCCCTTCATTGCGCGGCATCAGGTGGTGCTGTAAATGCTGTTGATGTGGTGAAACTACTTTTGGCAGCTGGCGCTGACCCTAATGCTGTCGATGCTGATAGTCACTATCCTGTTGATGTTATTGTGGTACCTCCCAGGCATGCACATTTGAAAAGTATTCTTGAAGAACTTCTTCAAACAGATTGTTCCATGGCAGGGTGTGGTCTTAGGGTGGTAACGTCTACAACAAATTCAAACTCTCCCCCTCCGTCAACTTCTCCAGAGAATGGGTCTCCTTCTGCACTAGAGTTCCATTTGAAGCTAAAGTTAAAGGAGGCCAACGCTTTATCTGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCTGACATCAAAAACAGCATCTACTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCATGTTCACGTGCATATTCACATGATTGGACTGAATGCCCTTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCGAGGAAATTTCATTATAGTTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCACCCAGCTCAGTATCGGACCCGCCTTTGCAAGGATGGGACCAGTTGTTCAAGAAGAGTTTGTTTCTTTGCCCATACAGCTGAGGAACTTCGGCCTTTGTATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTACCTGGCTCCCCTTCTTCAATGTCTGTTATGTCTCCTTCACCGTTCACCCCACCCATGTCACCGTCTGCCACTGGCATGTCACACTCTTCTGTTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCGGGAAGTAATATTCATTCCAGTCGTTTGAGATCTTCACTCAGTGCTAGAGATATCCCGGTGGAAGACTTTGACGTGTTGCCTGACTATGATATTCAGCAGCACCAGCTTCTTAATGAGATGTCTTGCCTTTCCCAGCAATCTATGAATTCTAATAGCCTAAACCGATCTGGTCGGATGAAGACCCTGACCCCATCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCTGATCAAACATTGAGTTCAGCTGTCTTTTCACCCAAACATAAATCAGCTCTCCTTAATCAATTTCAGCAGCAACAAAGCTTGCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTTGAACACCCTTTGTTACAGGCCTCGTTCCAAACGTCAGGCAGGATGTCTCCACGTAATGTGGAACCTATCTCACCGATGAGCTCTAGGCTTTCTGTGCTAGCTCAACGTGAAAAGCAGCAGTTTCGTAGCCTTAGCTCTCGGGATCTTGGCTCCAACTCTGCCGCTGCTGTTGCCGCTGCTTCTGGTTTCAATGACAGTTCTTGGTCAGAATGGGGATCCACCAATGGTAAATTGGATTGGGCCGTCAATGCTGATGATTTGGGCAAGCTCCGCAGATCATCGTCGTTCGAGTTTGGTAGCAATGGCGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAGGAGAAATTGGGAACAGCTGTGTCAAGTGTTGCGGGGGGTGCATACACTAGTGAGGGATAG 2091 0.4648 MCCDLEWLKLAPSPAASLILSSNTPTRNGKMNHLTVETEDSFANLLDLAANNDVEHFKRSIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIRVILSSSDADINRSCGLDKSTALHCAASGGAVNAVDVVKLLLAAGADPNAVDADSHYPVDVIVVPPRHAHLKSILEELLQTDCSMAGCGLRVVTSTTNSNSPPPSTSPENGSPSALEFHLKLKLKEANALSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSVAWPQPNVPNLHLPGSNIHSSRLRSSLSARDIPVEDFDVLPDYDIQQHQLLNEMSCLSQQSMNSNSLNRSGRMKTLTPSNLDDLFSAESSSPRFADQTLSSAVFSPKHKSALLNQFQQQQSLLSPVNTNFSSKNVEHPLLQASFQTSGRMSPRNVEPISPMSSRLSVLAQREKQQFRSLSSRDLGSNSAAAVAAASGFNDSSWSEWGSTNGKLDWAVNADDLGKLRRSSSFEFGSNGEEPDLSWVQSLVKESPTEIKEKLGTAVSSVAGGAYTSEG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4648g00024 696 MobiDBLite consensus disorder prediction 399 420 - -
Pral4648g00024 696 MobiDBLite consensus disorder prediction 198 217 - -
Pral4648g00024 696 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Pral4648g00024 696 Gene3D - 38 188 IPR036770 -
Pral4648g00024 696 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Pral4648g00024 696 Gene3D - 298 361 - -
Pral4648g00024 696 MobiDBLite consensus disorder prediction 198 218 - -
Pral4648g00024 696 FunFam Zinc finger CCCH domain-containing protein 66 256 324 - -
Pral4648g00024 696 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Pral4648g00024 696 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Pral4648g00024 696 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Pral4648g00024 696 Pfam Ankyrin repeats (3 copies) 83 156 IPR002110 GO:0005515
Pral4648g00024 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Pral4648g00024 696 SUPERFAMILY Ankyrin repeat 49 168 IPR036770 -
Pral4648g00024 696 SMART ANK_2a 122 154 IPR002110 GO:0005515
Pral4648g00024 696 SMART ANK_2a 87 117 IPR002110 GO:0005515
Pral4648g00024 696 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Pral4648g00024 696 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Pral4648g00024 696 PANTHER UNKEMPT FAMILY MEMBER 47 672 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4648g00024 Pral-Chr4648 115664 119805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4648g00024 36 696 C2H2 Transcription Factor Family AT5G12850 55.391 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4648g00024 Ank_2 7.2e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4648g00024 - - qsa:O6P43_006533 993.03