Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4648g00021 ATGATGCTGCCAAAATTGGATGACGCGTACCATTCAGAACCAAATATCAGCAGCAATAAGCTGTATGCGACCTGTTCTCGAGCTCAGTGCCATGGCCTGGCTAATGGAGCCTCCTCGAGGGACATGGTATTGGAAGATGGCAAGACTGATGAAGAACATCAGCAAACACAATTTCCTGTTCCCAGCGTGCCTTCAACAGTAAATGAAGTTTTTGCCCAACCATCACAGTTGGAGCTTGTTGGCCCCTCAATGGCATGTGCCCCTTACCCATATTCAGGTCCCAATTATGCAGGAGTGACCTCAAGTTATGGACCTCAGCCTCTGGTGCATTCTCATGGTATAGGAGTTCATACCACGCAAATGGTCTTACCGCTGGAAATTGCAGAGGAGCCTGTTTACGTTAATGCGAAGCAGTACCATGGAATTCTGAGGCGTAGGCGATTACGTGCCAAAGCAGAGCTGGAAAAGAAGCTAATTAAAGGAAGGAAGCCTTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGGGCCAGAGGATGTGGCGGCCGTTTCCTGAACACAAAGAAGCTCGATAATGATGCAACTTCTGCGAAATCCACAACAAACAATGAGGATGCTGCTACTTATGACCTTAATAATTCCTTTTCTACTGATTCAAAGTCAACGTCTCCCGATAAAAACAAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGTGACTTCTCAGCACAGAAGTCTGAAACGCTCAACCACAGTATGAGGCCTGGCAGAGTCCTCACCATTAATTAA 795 0.4667 MMLPKLDDAYHSEPNISSNKLYATCSRAQCHGLANGASSRDMVLEDGKTDEEHQQTQFPVPSVPSTVNEVFAQPSQLELVGPSMACAPYPYSGPNYAGVTSSYGPQPLVHSHGIGVHTTQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLDNDATSAKSTTNNEDAATYDLNNSFSTDSKSTSPDKNKHCSHVQGFDLEGDFSAQKSETLNHSMRPGRVLTIN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4648g00021 264 ProSitePatterns NF-YA/HAP2 subunit signature. 133 153 IPR018362 GO:0003677|GO:0016602
Pral4648g00021 264 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 28 245 IPR001289 GO:0003700|GO:0006355
Pral4648g00021 264 MobiDBLite consensus disorder prediction 195 233 - -
Pral4648g00021 264 MobiDBLite consensus disorder prediction 195 222 - -
Pral4648g00021 264 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 130 185 IPR001289 GO:0003700|GO:0006355
Pral4648g00021 264 Gene3D - 128 189 - -
Pral4648g00021 264 PRINTS CCAAT-binding transcription factor subunit B signature 162 185 IPR001289 GO:0003700|GO:0006355
Pral4648g00021 264 PRINTS CCAAT-binding transcription factor subunit B signature 131 153 IPR001289 GO:0003700|GO:0006355
Pral4648g00021 264 ProSiteProfiles NF-YA/HAP2 family profile. 128 188 IPR001289 GO:0003700|GO:0006355
Pral4648g00021 264 SMART cbf3 127 188 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4648g00021 Pral-Chr4648 87243 92959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4648g00021 14 223 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.623 1.58e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4648g00021 CBFB_NFYA 8.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4648g00021 K08064 - tcc:18598988 211.46