Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4647g00011 ATGGCTTCTTCTTCCTCTGATCCTCCTGCCAAGCCCGAGCTTGGCTGTGCCATGCCAGAGACTTCGGAAGCAGCCATCAACAACGATCAGGTGTTTTCATACAGGGATTTCAAGAAGCCGAAGAAAGAGAGAGGATGTACGGCCAAAGAGAGAATCAGCAAAATGCCCCCTTGTACTGCCGGCAAACGCAGCTCCATATATCGTGGTGTAACCAGGCATAGATGGACAGGTCGTTATGAAGCACATCTTTGGGATAAGAGCACGTGGAACCAAAATCAGAACAAGAAAGGAAAGCAAGTTTACTTGGGCGCGTATGATGATGAAGAGGCTGCGGCTAGAGCTTATGACCTTGCTGCTCTAAAATATTGGGGTCCAGGGACTCTTATTAATTTTCCAGTGTCTGATTATACAAGAGATCTTGAAGAAATGCAGAATTTTTCGAGAGAAGAATACCTAGCGTCTTTACGACGGAAGAGCAGTGGCTTTTCTAGAGGAATCTCAAAATATCGTGGACTCTCCAGTCGATGGGAGCCATCATATGGTCGCATGGCTGGATCTGACTACTTCAATAGCATACATTATGGTACAGGTGACGACTCAGCTGCAGAAAGTGAATATTTAAGTGGTTTCGGTGTGGACAGAAAAACTGATTTAACGAGTTACATTAAATGGTGGGGATCTAATAAGAGTCGCCAAGCTGATACTGGAACAAAATTATCAGAAGAAAAAAACCGTAGTTTTGCTGGAGGAGACCATGGCAGTGAGCTCAGAACATTGGAACAGCAAACACGACCTACTGAACCATATCAGATGCCACGGTTAGGCACGTCCCATGATGAAAAAAGGCATAAAAATCCTTCAGTTTCTGCTTTAAGTATCTTGTCTCGATCAGCTGCCTACAAGAGCTTGCTAGAGAACGCATCAAAGAGAGAGGGAAATAGCACTGACCCTAATGAAAATGAAAACAAAAATGGCATTGATAAGTTGGACCGTGGCAAGGCTGTGGAGAAATCATCAAATCATGATGGCGGCAATGAAGGACCTGAATCTGTAATGGGGATGAGTGGGGCTTTGTCTCTTCAAAAGAATGTTTACAACCCACTGGCTCCATTCTTGTCTGCACCCCTTTTGACTGCTTGTAGTACTATCGATCCCTTAGTAGATCCTCTTCTCTGGACGTCTCTTGCTCCTATGCTTCCTGCTGGCCTTCCCCGTAATGCTGAGGTTACAAAGACTGAGGCCAGTTCATCTTATAGCGTCTTCCAGCCGGAGGACTGA 1278 0.4531 MASSSSDPPAKPELGCAMPETSEAAINNDQVFSYRDFKKPKKERGCTAKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVSDYTRDLEEMQNFSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMAGSDYFNSIHYGTGDDSAAESEYLSGFGVDRKTDLTSYIKWWGSNKSRQADTGTKLSEEKNRSFAGGDHGSELRTLEQQTRPTEPYQMPRLGTSHDEKRHKNPSVSALSILSRSAAYKSLLENASKREGNSTDPNENENKNGIDKLDRGKAVEKSSNHDGGNEGPESVMGMSGALSLQKNVYNPLAPFLSAPLLTACSTIDPLVDPLLWTSLAPMLPAGLPRNAEVTKTEASSSYSVFQPED 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4647g00011 425 Pfam AP2 domain 66 124 IPR001471 GO:0003700|GO:0006355
Pral4647g00011 425 FunFam AP2-like ethylene-responsive transcription factor 65 134 - -
Pral4647g00011 425 SMART rav1_2 66 138 IPR001471 GO:0003700|GO:0006355
Pral4647g00011 425 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Pral4647g00011 425 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Pral4647g00011 425 MobiDBLite consensus disorder prediction 231 291 - -
Pral4647g00011 425 Gene3D AP2/ERF domain 66 134 IPR036955 GO:0003700|GO:0006355
Pral4647g00011 425 MobiDBLite consensus disorder prediction 235 250 - -
Pral4647g00011 425 SUPERFAMILY DNA-binding domain 65 134 IPR016177 GO:0003677
Pral4647g00011 425 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 310 - -
Pral4647g00011 425 MobiDBLite consensus disorder prediction 312 343 - -
Pral4647g00011 425 MobiDBLite consensus disorder prediction 306 353 - -
Pral4647g00011 425 ProSiteProfiles AP2/ERF domain profile. 66 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4647g00011 Pral-Chr4647 66705 70858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4647g00011 28 409 AP2-EREBP Transcription Factor Family AT2G41710 61.954 7.17e-153 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4647g00011 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4647g00011 K09285 - qsa:O6P43_034512 639.032