Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4647g00010 ATGGAAAGAAAGGAAGTGATGATGATGGAGGAAGTGAAGAACAAAGAGTCGTTGGATCAGTTACATGCAAGGAAGTCGAACCCACCACCCTTCTTGTTAAAGACATACATGCTGGTGGAGGATCCCGCCACCGACGACGTCATATCGTGGAACGCTGACGGCACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCCCGCGACCTTCTTCCTACTCTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTGAATACCTATGGATTTCGTAAAGCGGCGACGAACAGATGGGAATTTTGCAACAACAAATTTAGGAAGGGGGAGAGAGAAAAACTAAGCGAGATTAGACGAAGAAAGGCGTGGTCAAGCAGGCAACAACAACAACCAGCAGGAACACAAGGAAATCATCAGGAATATTCAGAGGAAGACCAAAGGTCTTCTTCAACCTCTTCGTCTTCTGGTTATTCAACTCTCGTGGACGAAAACAAGAGACTCAAGAGAGAGAATGGGGCATTGAACTCTGAGCTCACGGCCATGAAGAGGAAGTGCAAGGACCTGCTTGAGCTCGTGGCTAAGCATGCCAAGAAAACCGAGCAGGAAGACGAGAGGCCTATGTTATTTGGGGTAAGGCTCGATGTGAACCAAGGACAGAGAGACTTGAAGACAGAGACAAATAATAATCCCAGTATTTTACTGCCCCAGTCATGCAAATGA 720 0.4806 MERKEVMMMEEVKNKESLDQLHARKSNPPPFLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAATNRWEFCNNKFRKGEREKLSEIRRRKAWSSRQQQQPAGTQGNHQEYSEEDQRSSSTSSSSGYSTLVDENKRLKRENGALNSELTAMKRKCKDLLELVAKHAKKTEQEDERPMLFGVRLDVNQGQRDLKTETNNNPSILLPQSCK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4647g00010 239 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4647g00010 239 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4647g00010 239 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4647g00010 239 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4647g00010 239 Coils Coil 157 184 - -
Pral4647g00010 239 MobiDBLite consensus disorder prediction 124 139 - -
Pral4647g00010 239 MobiDBLite consensus disorder prediction 220 239 - -
Pral4647g00010 239 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 199 IPR027725 -
Pral4647g00010 239 MobiDBLite consensus disorder prediction 146 161 - -
Pral4647g00010 239 SUPERFAMILY "Winged helix" DNA-binding domain 26 120 IPR036390 -
Pral4647g00010 239 Gene3D - 22 121 IPR036388 -
Pral4647g00010 239 MobiDBLite consensus disorder prediction 117 164 - -
Pral4647g00010 239 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4647g00010 239 FunFam Heat stress transcription factor B-4 23 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4647g00010 Pral-Chr4647 63250 64709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4647g00010 28 195 HSF AT2G41690 63.333 2.16e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4647g00010 HSF_DNA-bind 4.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4647g00010 K09419 - qsu:112013936 319.316