Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4646g00088 ATGGAAGTCGAGGAGGAACAGACTACGTCAACTGTTTCTGCAGAAACCTCTGTACCATCATCTGATGTTCAAAGCACGGTTTCTCCTGTTCCTGCTGTGCTGCCCTCGCCAGTGCAACCTGTTATTCCAACAGTTCCACCATCTATTGTGCCCCCTATTGCTCCTATTCCTTCAATTCCTCCTCCCACCACTCTCCGCCCACTGGCGCCACTTCCTGTTCGTCCACCATCTATTAGGCCACCCATGTCACAAAATGGTGAGGTTAGATCAACTGACTCTGATTCAGATCATGATGACTCCGGCCCTGGGATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTTAGAGAGAGGCAGGAAAAGGCAATGCAGGAGCTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAACGACATGGCTGTGCGAGCTCGTCTGCGCCGTCTTGGTGAACCGATCACTCTTTTTGGTGAAAGGGAGATGGAGAGAAGAGACAGGTTGCGAATGATTATGGCAAAACTGGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAAGCTCATGAAGATGAAGAGGCTGTAGCTTCTGCTGCACAAGAAGAAGCTGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTAAGAGCAGCAGCACGTCTTCATCGTGCTCGAAGAAGAAGAGATGATCCAGATGAAGATATAGATGCAGAAATGGATTGGGCACTGAAGCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATTGGAGATGACCGGCCACTTTCTGGTTGCTCCTTCTCAGCAGATGGAAAATGCCTTGCTACCTGTTCCCTGACTGGAGCTGCGAAGCTTTGGAGCATGCCTGAAGTTAAAAAAATTTCTACCTTCAAGGGGCACACAGAGCGTGCTACTGATGTTGCTTACTCTCCTGTGCACAACCATTTAGCAACTGCCTCTGCTGACCGCACTGCAAGGTATTGGAATGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTCCATCCATCTGGGAAGTACTTGGGCACTGCTAGCTTTGACAAGACGTGGAGATTGTGGGACATAGAAACAGGAGAGGAATTGCTTCTCCAAGAAGGTCACAGTAGGAGTGTATATGGTTTAACTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAATGGTTATCATTTAGCCACAGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCTTGTACGTCATACCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAAGAGGGTTATTTTTTGGTAACAGCTTCGTATGACATGACAGCGAAGGTATGGTCAGCTCGTGATTTTAAGCCTGTCAAAACGTTATCTGGGCATGAATCAAAAGTCACTTCTCTAGATATTCTTGGAGATGGACGTTATATTGCTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGACTAGTGAACAAGCTATGGATGTTGACTGA 1722 0.4669 MEVEEEQTTSTVSAETSVPSSDVQSTVSPVPAVLPSPVQPVIPTVPPSIVPPIAPIPSIPPPTTLRPLAPLPVRPPSIRPPMSQNGEVRSTDSDSDHDDSGPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAVASAAQEEAEEDLQYPFYTEGSKALLDARVDIAKFSLVRAAARLHRARRRRDDPDEDIDAEMDWALKQAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGAAKLWSMPEVKKISTFKGHTERATDVAYSPVHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLTFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHESKVTSLDILGDGRYIATVSHDRTIKLWSSNMTSEQAMDVD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4646g00088 573 MobiDBLite consensus disorder prediction 53 79 - -
Pral4646g00088 573 Pfam WD domain, G-beta repeat 354 392 IPR001680 GO:0005515
Pral4646g00088 573 Pfam WD domain, G-beta repeat 442 476 IPR001680 GO:0005515
Pral4646g00088 573 Pfam WD domain, G-beta repeat 403 434 IPR001680 GO:0005515
Pral4646g00088 573 Pfam WD domain, G-beta repeat 315 351 IPR001680 GO:0005515
Pral4646g00088 573 Pfam WD domain, G-beta repeat 524 561 IPR001680 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 528 IPR001680 GO:0005515
Pral4646g00088 573 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 487 563 - -
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 401 IPR001680 GO:0005515
Pral4646g00088 573 PANTHER WD40 REPEAT PROTEIN 95 562 - -
Pral4646g00088 573 Pfam pre-mRNA processing factor 4 (PRP4) like 149 175 IPR014906 -
Pral4646g00088 573 CDD WD40 283 561 - -
Pral4646g00088 573 ProSitePatterns Trp-Asp (WD) repeats signature. 421 435 IPR019775 -
Pral4646g00088 573 MobiDBLite consensus disorder prediction 53 117 - -
Pral4646g00088 573 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Pral4646g00088 573 PRINTS G protein beta WD-40 repeat signature 463 477 IPR020472 -
Pral4646g00088 573 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Pral4646g00088 573 Coils Coil 187 211 - -
Pral4646g00088 573 ProSitePatterns Trp-Asp (WD) repeats signature. 463 477 IPR019775 -
Pral4646g00088 573 SUPERFAMILY PRP4-like 127 182 IPR036285 -
Pral4646g00088 573 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 259 443 - -
Pral4646g00088 573 MobiDBLite consensus disorder prediction 1 37 - -
Pral4646g00088 573 Gene3D - 445 571 IPR015943 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 351 - -
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 444 485 IPR001680 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 561 IPR001680 GO:0005515
Pral4646g00088 573 MobiDBLite consensus disorder prediction 1 32 - -
Pral4646g00088 573 SMART pr04_2 144 197 IPR014906 -
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 397 - -
Pral4646g00088 573 ProSitePatterns Trp-Asp (WD) repeats signature. 379 393 IPR019775 -
Pral4646g00088 573 Gene3D - 120 189 IPR036285 -
Pral4646g00088 573 SUPERFAMILY WD40 repeat-like 276 560 IPR036322 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 444 478 - -
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 351 IPR001680 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 439 - -
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 561 - -
Pral4646g00088 573 SMART WD40_4 312 351 IPR001680 GO:0005515
Pral4646g00088 573 SMART WD40_4 522 561 IPR001680 GO:0005515
Pral4646g00088 573 SMART WD40_4 353 392 IPR001680 GO:0005515
Pral4646g00088 573 SMART WD40_4 479 519 IPR001680 GO:0005515
Pral4646g00088 573 SMART WD40_4 395 434 IPR001680 GO:0005515
Pral4646g00088 573 SMART WD40_4 268 309 IPR001680 GO:0005515
Pral4646g00088 573 SMART WD40_4 437 476 IPR001680 GO:0005515
Pral4646g00088 573 Gene3D - 261 444 IPR015943 GO:0005515
Pral4646g00088 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4646g00088 Pral-Chr4646 434494 438355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4646g00088 364 560 U-box Gene Family AT2G33340 23.529 1.98e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4646g00088 K12662 - gmx:100788948 843.958