Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4646g00065 ATGTCCCTCGAAGATTCTCTAAGATCTCTTTCCCTGGACTACCTCAACCTCCTCATCAACGGCCAGGCCTTCAGTGACGTCACCTTCAGCGTCGAGGGTCGTCTCGTCCACGCTCATCGATGCATCCTCGCTGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGTGCACCGGACCCTCCGTCGGGGTTAGACCCGGCCAGCTCTCGGGTCAACTCGGCTGCCTGCGGCCCGAGGCCTGGGATCATTCCGGTGAACTCAGTCGGGTACGAGGTATTCCTGTTGCTTCTTCAGTTTCTGTACAGCGGCCAGGTCTCTATTGTGCCTCAGAAGCACGAGCCCCGGCCCAATTGTGGCGAGCGAGGATGTTGGCACACGCATTGCACCTCCGCCGTTGATCTTGCTCTCGACACTCTTGCTGCCGCCAGATCTTTTGGCGTCGAACAGCTTGCATTGCTCACCCAGAAACAGTTAGCGAGTATGGTAGAGAAGGCGTCCATTGAAGATGTAATGAAAGTACTGGTAGCATCAAGAAAGCAAGACATGCACCAGCTGTGGGCCACTTGCTCCCACCTCGTTGCCAAGTCAGGTCTCCCGCCCGAAGTCCTCGCCAAACACCTTCCCATCGACGTCGTTGCTAAGATTGAAGAGATTCGTCTCAAATCCTCCTACATTCGCCGCTCTCTATTGCCCTATCACCACCCGGATATCCGCGTGGCCGACCTCGAGGACCAGAAAATCCGGCGAATGAAGAGAGCACTGGACTCCTCGGATGTCGAGCTGGTTAAGCTGATGGTAATGGGGGAAGGCTTAAATCTAGACGAAGCATTGGGCTTGCACTACGCCGTAGAGAATTGCAGCCGAGAAGTGGTGAAAGCATTGCTGGAGCTTGGGGCGGCCGATGTCAACTATCCAGCCGGGCCTTCCGGGAAAACTCCGCTTCACATTGCATCAGAGATGGTATCGCCGGACATGGTGGCAGTGCTCTTGGACCACCATGCTGATCCGAATGTCCGGACCGTCGATGGTGTGACCCCACTCGACATCCTCAGAACCCTAACTTCAGATTTCCTTTTCAAAGGGGCTGTACCTGGGCTAACCCACATCGAACCCAACAAGCTGAGGCTGTGCTTGGAACTGGTTCAATCGGCGGCTCTAGTGATATCTCGCGAAGAAGGAAATGCGAATCCTCCCACATCAACGGCCATATATCCGCCACTAAGTGAAGATCATAGCAGTGGGAGCAGCAGCAACCTGAACCTGGACTCTAGGTTGGTTTATCTGAATCTGGGTGCGGCGGCTTCGGGTCAAATAGTTTCCAGACTGGACGGAGATGACGATAGCCACAGGGATCCCATGAACCGTCATGGTTCGCAAGGAGGCGGATGTGACCCAACAATGTACCACCACCATCACTCCCATGATTTTTAG 1428 0.5462 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDPPSGLDPASSRVNSAACGPRPGIIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLAKHLPIDVVAKIEEIRLKSSYIRRSLLPYHHPDIRVADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALGLHYAVENCSREVVKALLELGAADVNYPAGPSGKTPLHIASEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANPPTSTAIYPPLSEDHSSGSSSNLNLDSRLVYLNLGAAASGQIVSRLDGDDDSHRDPMNRHGSQGGGCDPTMYHHHHSHDF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4646g00065 475 SUPERFAMILY POZ domain 8 159 IPR011333 -
Pral4646g00065 475 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Pral4646g00065 475 Gene3D Potassium Channel Kv1.1; Chain A 4 194 IPR011333 -
Pral4646g00065 475 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Pral4646g00065 475 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Pral4646g00065 475 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Pral4646g00065 475 CDD BTB_POZ_NPR_plant 8 161 - -
Pral4646g00065 475 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Pral4646g00065 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 471 IPR044284 GO:0099402
Pral4646g00065 475 MobiDBLite consensus disorder prediction 392 415 - -
Pral4646g00065 475 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Pral4646g00065 475 Gene3D - 241 356 IPR036770 -
Pral4646g00065 475 SMART ANK_2a 308 337 IPR002110 GO:0005515
Pral4646g00065 475 SMART ANK_2a 273 303 IPR002110 GO:0005515
Pral4646g00065 475 SMART BTB_4 25 161 IPR000210 GO:0005515
Pral4646g00065 475 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Pral4646g00065 475 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Pral4646g00065 475 MobiDBLite consensus disorder prediction 391 415 - -
Pral4646g00065 475 Pfam Domain of unknown function (DUF3420) 196 249 IPR024228 -
Pral4646g00065 475 MobiDBLite consensus disorder prediction 440 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4646g00065 Pral-Chr4646 325081 328112 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4646g00065 BTB 1.2e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4646g00065 K14508 - zju:107433767 780.785