Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4646g00052 | ATGTTGAATTTATCGCCTTCTCTGTTTGCGCCCAGTGAGTGGGACATGGAGGAACCCACAAATCGCAACGATGATCATCAGAACTTGTTTTTCAAAGACGGAACTACTCTTCAGTTTAGCTTCTCGCCACCACCTGCAGATCATCAGGTTGAGGAGGCTCAGAGATCTACGCCACTATCCCTTGCCCCAAGTGAAGACCCGACCACCGTCAAAAAGCTTAACCACAATGCCAGTGAACGCGATCGCCGCAAGAAGATCAACTGCTTGTATTCTTCACTTCGTTCTATGCTTCCTTGGTCTGATGCAACGAAAAAGTTGAGCATCCCGGCAACAATTTCACGAGTCCTAAAGTACATACCGGAGTTGCAGCAGCAAGTGGAAGAGCTTATCAAGAAAAGGGAGGACCTTTTGTTGAGAATCTCTCGGCAAGGAGATGCGTCGAGCAAAGAATCTCGAAGGAAGATGGCTCATCACTCCGCTGCCACCGCTTGCGTAGTTTCAACAAGCAGGCTCAGTGACAATGAAGCTGTTGTTCAGATTTCCTCCGACAAGCTCCACAAAGCTGCTTTCTCTCAGGTTTTGCTTTGTTTAGAGAAGGAAGGGCTTTTATTGCTAAATGCTTCAACCTTTGAGACATTTGGACAACGGATCTTCTATAACTTGCATTTGCAGATGGATGAAATTTGTAGAATAGAGCCAGAAATTCTAACCGAGAAGATTTCATCAATATATGAGAGGAAGGAAGGGAATTTTCAATGTTTTTAA | 765 | 0.4497 | MLNLSPSLFAPSEWDMEEPTNRNDDHQNLFFKDGTTLQFSFSPPPADHQVEEAQRSTPLSLAPSEDPTTVKKLNHNASERDRRKKINCLYSSLRSMLPWSDATKKLSIPATISRVLKYIPELQQQVEELIKKREDLLLRISRQGDASSKESRRKMAHHSAATACVVSTSRLSDNEAVVQISSDKLHKAAFSQVLLCLEKEGLLLLNASTFETFGQRIFYNLHLQMDEICRIEPEILTEKISSIYERKEGNFQCF | 254 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4646g00052 | 254 | Gene3D | - | 64 | 153 | IPR036638 | GO:0046983 | |
| Pral4646g00052 | 254 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 70 | 122 | IPR011598 | GO:0046983 | |
| Pral4646g00052 | 254 | SMART | finulus | 76 | 128 | IPR011598 | GO:0046983 | |
| Pral4646g00052 | 254 | Coils | Coil | 119 | 139 | - | - | |
| Pral4646g00052 | 254 | PANTHER | ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED | 52 | 242 | - | - | |
| Pral4646g00052 | 254 | Pfam | Helix-loop-helix DNA-binding domain | 71 | 123 | IPR011598 | GO:0046983 | |
| Pral4646g00052 | 254 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Pral4646g00052 | 254 | FunFam | Transcription factor ORG2 | 66 | 156 | - | - | |
| Pral4646g00052 | 254 | CDD | bHLH_AtORG2_like | 71 | 143 | - | - | |
| Pral4646g00052 | 254 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 70 | 140 | IPR036638 | GO:0046983 | |
| Pral4646g00052 | 254 | MobiDBLite | consensus disorder prediction | 41 | 70 | - | - | |
| Pral4646g00052 | 254 | MobiDBLite | consensus disorder prediction | 53 | 70 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4646g00052 | Pral-Chr4646 | 245409 | 246797 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4646g00052 | 1 | 251 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G56970 | 42.692 | 2.58e-60 | 189 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Pral4646g00052 | HLH | 5.3e-11 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4646g00052 | - | - | pcin:129307381 | 351.673 |