Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4646g00051 ATGTTGGCTTTATCGCCTTCTCTGTTCGCACCCATCGAGTGGGCCTTAGAGGAACGCACAAGTCCCAGTGATCATAACTTGTTTTACAAAGACGGGGTTGCTGATCTTCAGTTTAGTTGCTCGCCGCCACCAGATCATCAGGTTCAGGTTGAGGTTGAGGAGGCTCAGAGATCCACGCCAATATCCCTTGCCGCGAGCGGCGACCCTACCATGGTCGTCAAAAAGCTTAACCACAACGCTAGTGAACGCGATCGTCGCAAGAAGATCAATAGCCTCTATTTCTCACTTCGTTCTATGCTTCCTTTGGCTGATCAAACGAAAAAGTTAAGTATCCCGGCAACTATTTCACGAGTCCTAAAGTACATACCGGAGTTACAGCAGCAAGTGGAAGTGCTTATCAAGAAGAAGGAGGACCTTTTGTTGAGATTCTCTCGGCAAGGAGATGCGTCAAGTAAAGAATCTCGAAGGAAAATGGTTCATCACTACGCTGCCACTGCTTGCGTAGTTTCAACAAGCAGGCTCAGTGACAACGAAGCTGTTATTCAGATTTCCTCTGACAAGCTCCACAAAACTCCTTTCTCTGAGATATTGCTGTGTTTAGAAAAGGAAGGGCTTTTATTGCTTAATGCTTCCACCTTTGAGACCTTTGGGCAACGGGTCTTCCATAACTTGCATTTGCAGATGGATGAAACTCGTAGAATAGAGCCAGAAATTCTAAGCGAGAAGATTTTGTCAATATATGAGAGGAAGGAAGGGAATTTTCAATGTTTTTAA 774 0.4509 MLALSPSLFAPIEWALEERTSPSDHNLFYKDGVADLQFSCSPPPDHQVQVEVEEAQRSTPISLAASGDPTMVVKKLNHNASERDRRKKINSLYFSLRSMLPLADQTKKLSIPATISRVLKYIPELQQQVEVLIKKKEDLLLRFSRQGDASSKESRRKMVHHYAATACVVSTSRLSDNEAVIQISSDKLHKTPFSEILLCLEKEGLLLLNASTFETFGQRVFHNLHLQMDETRRIEPEILSEKILSIYERKEGNFQCF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4646g00051 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 142 IPR036638 GO:0046983
Pral4646g00051 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Pral4646g00051 257 SMART finulus 79 131 IPR011598 GO:0046983
Pral4646g00051 257 FunFam Transcription factor ORG2 69 160 - -
Pral4646g00051 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 244 - -
Pral4646g00051 257 Coils Coil 122 142 - -
Pral4646g00051 257 Gene3D - 68 160 IPR036638 GO:0046983
Pral4646g00051 257 CDD bHLH_AtORG2_like 74 146 - -
Pral4646g00051 257 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4646g00051 Pral-Chr4646 242337 243884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4646g00051 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.346 3.83e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4646g00051 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4646g00051 - - pcin:129307381 385.185