Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4646g00018 ATGGAATATGATGAATTCATCGACCCAACTGATCAATCTTCTCAAGGTGCTTCGTCGGAAAGATACCTGCTTGGCTTCGTCTGCGCCCACATCGTTGGGGTTAAGTACTATTCGGGCACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTACGATGAGAACGCCATTAGGGTCCTCAACACTAGAGCAACTCAGGTTGGGCATATTGAGCGCTCCGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCGAGCTCATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGCTTCTACGTTGTCAGAGTCTATGGCTGTGAAAGAAAGGAAGGCTAAGAATGATTTTAAGAGTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATTTTAGCAAAAAGGGTATATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTAATCTTTTCCTACATCAGAAGGAAGGCTTGGGGTGGTTAGTTCATCGAGAGAATTCTGGTGAATTGCCGCCATTTTGGGAAGAGAAAGATGGAGCCTTTGTGAATGTTTTGACTAATTATCATACGAACACAAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCAGATGATATGGGATTAGGCAAGACCTTAACTTTACTTTCCTTAATTGCTCTTGATAAAGATTCTATTTCTCTAAATACGGAAGAAGGGAAGCATGATGAAAATGGGGGGCGCAATGAAGGATTCGCTGTCTCAAGTGGTAAGAAGGGTAAGAGGAGAGGAACAAATAAACAGATCACTGGATCAGAAAAAAAACGCAAGACTGAGAGTACTTCTTCAAGGGGCCATGTAAAAGGAAAATCTGTTGCTGCAGATGTCACACCTTCAACTGGCATGAATATGAAGACTACCTTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATATCACAGTTAGAAGAACATACTAAACCAGGAACATTGAAGACGTACATGTATTATGGTGATAAAAGGACCGAGGATGCTGAAGAACTTAAGATGTATGATTTAGTATTAACCACATACACGACCTTAGCTACTGAAGAATCTTCTCCAGACTCACCCATAAATAAAGTATATTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATCAAAAATGTGAATGCTAAACAAAGTCAAGCTGTCATGAAAATTGTAGCTGAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCAGAGCTTGGTGCAGCTTCCTCTTGTTGAAAGAAACCCAAACGGACTCTTACGTCTTCAGGTCTTGATGGCAACAATTTCATTGCGAAGAACGAAGGATAAAGCATTGGTGGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTGGAACTTCTTGAGGAAGAACGGAAACTATATGATCAGATAGAATCGAGAGCAAAGAACATAGTGGCAGGTTATTTTAATGACGGAAGCATAACGCGCAACTATTCCACTGTACTTGGTATAATTTTACGGCTTCGACAAATTTGTACTGATATGGCATTGTGCCCATCAGATATCAAATCTTTACTCCCTTCTAATAGCATCGAAGATGTTTCCAATAACCCGGAATTGCTGCAAAAGTTGGTAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCGCCAACGGATATTGTAATTACATGCTGTGCTCACATATTCTGCCAAGCTTGTATTCTGAAAACCCTACAGCGGAGCAAAGCCTGTTGTCCCCTTTGTCGTCACCCCCTCAACGAATCTGACTTGTTCTCCGCCCCACCTCAATCTTCTGATGCTGATGCTGCTGGACTCTCTTCGGACAAGACAAGCTTATCCTCTAAAGTATCTGCTCTGGTGAAACTTCTTGTTGCCTCAAGGGATCAACATCCATCTGCAAAATCAGTTGTGTTTTCTCAATTTCGTAAGATGCTGATCTTACTGGAACAACCTCTGAAGGCAGCTGGTTTCAAGACACTGCGCCTTGACGGGACCATGAATGCTAAACGAAGGGTTCGAGTTATGGAAGAATTTGCAGCTGGAGGAACAGATGAACCCATTGTTCTACTGGCAAGCCTCAAGGCTACAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAGGCAATGGATCGTGTGCACCGCATTGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAACAGCATTGAAGAGAGGATATTGGAGTTGCAAGAGAAGAAGCAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAAAGCAAAGGACGGTAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2478 0.4342 MEYDEFIDPTDQSSQGASSERYLLGFVCAHIVGVKYYSGTISGREMVGLVREPLNPYDENAIRVLNTRATQVGHIERSVAAVLSPLIDSELIIVEGIVPKTYSASTLSESMAVKERKAKNDFKSVDEIFKLVDENFSKKGILEALEPPRSVIKSNLFLHQKEGLGWLVHRENSGELPPFWEEKDGAFVNVLTNYHTNTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSISLNTEEGKHDENGGRNEGFAVSSGKKGKRRGTNKQITGSEKKRKTESTSSRGHVKGKSVAADVTPSTGMNMKTTLVVCPASVISTWISQLEEHTKPGTLKTYMYYGDKRTEDAEELKMYDLVLTTYTTLATEESSPDSPINKVYWWRVILDEAHVIKNVNAKQSQAVMKIVAERRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTKSYWQSLVQLPLVERNPNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRAKNIVAGYFNDGSITRNYSTVLGIILRLRQICTDMALCPSDIKSLLPSNSIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTLQRSKACCPLCRHPLNESDLFSAPPQSSDADAAGLSSDKTSLSSKVSALVKLLVASRDQHPSAKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKRRVRVMEEFAAGGTDEPIVLLASLKATGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERILELQEKKQQLAKEAFGKRKAKDGREVGGDDFRMLLSL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4646g00018 825 SMART ring_2 580 618 IPR001841 -
Pral4646g00018 825 SMART ultradead3 152 443 IPR014001 -
Pral4646g00018 825 Pfam Zinc finger, C3HC4 type (RING finger) 580 618 IPR018957 GO:0046872
Pral4646g00018 825 CDD SF2_C_SNF 649 779 - -
Pral4646g00018 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 460 IPR027417 -
Pral4646g00018 825 Gene3D - 287 470 IPR038718 -
Pral4646g00018 825 Pfam Helicase conserved C-terminal domain 652 768 IPR001650 -
Pral4646g00018 825 SMART HIRAN_2 24 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral4646g00018 825 Pfam HIRAN domain 25 102 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral4646g00018 825 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 655 815 IPR001650 -
Pral4646g00018 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 812 IPR027417 -
Pral4646g00018 825 Gene3D - 16 130 - -
Pral4646g00018 825 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 431 IPR014001 -
Pral4646g00018 825 MobiDBLite consensus disorder prediction 235 296 - -
Pral4646g00018 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 646 IPR013083 -
Pral4646g00018 825 ProSiteProfiles Zinc finger RING-type profile. 580 619 IPR001841 -
Pral4646g00018 825 Coils Coil 781 801 - -
Pral4646g00018 825 SUPERFAMILY RING/U-box 564 625 - -
Pral4646g00018 825 MobiDBLite consensus disorder prediction 264 282 - -
Pral4646g00018 825 SMART helicmild6 683 768 IPR001650 -
Pral4646g00018 825 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 106 821 - -
Pral4646g00018 825 ProSitePatterns Zinc finger RING-type signature. 595 604 IPR017907 -
Pral4646g00018 825 Gene3D - 479 824 IPR027417 -
Pral4646g00018 825 Pfam SNF2-related domain 159 539 IPR000330 GO:0005524|GO:0140658
Pral4646g00018 825 Gene3D - 131 242 IPR038718 -
Pral4646g00018 825 CDD RING-HC_HLTF 575 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4646g00018 Pral-Chr4646 98409 102416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4646g00018 4 825 RAD5 or RAD16-like Gene Family AT5G05130 61.194 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4646g00018 SNF2_N 3e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4646g00018 K15711 - jre:108979720 1098.19