Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4644g00023 ATGGGGAGGAAGCGAAAGCTCACGCCAAAACCCGCCGAATCCTTTGAACCCCCATTGAAGCAACAGCATCAACAGCAGCAATATGAACCAGAAGCGGACCAAGCTGTGGAAGACCAAAATAATGGAGCCGATTACGAAGAAGTTGAAGTGGAAGAAGAGGAGGAGGTAGAAGAAGAGGAAGAGGAGGAACAAGAAGCAGGAGAAGGATCTGGAGATGATAACGATAATGCCGATCACGCCCAAAACGCGAACGATCAGGCTGCTAAGGCCCAGTCAACATCAGCGGCTGCAACATCAGTAACCGGTCAATATGGAAAGGAGGAGGGGGAGGAGGACGACGAGCCGATACATACGCTTCTGGAGCCTTTCAGCAAGGAACAAATTTTAAATCTGCTGTGCGAAGCGGCCAATAAACATCGCGATGTAGCGGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGTTCATCGAAAAATCTTCGTCCACGGCCTCGGATGGGACACAAACGCTGATACCCTCATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAGGCGGTATGTGACAAGGTATCCGGTAAATCCAAGGGGTATGGCTTCATCCTCTTCAAATCGCGTCGTGGGGCTCGTAATGCGCTGAAGCAACCGCAGAAGAAGATTGGGAACCGAATGACGGCCTGCCAGCTGGCTTCGGTTGGCCCGGTTCAACAGCCAGCCCCTGTACCATCGACCCCATCACAACCGGTATCGGAGTATACCCAAAGGAAGATTTATGTCAGCAATGTTGGGGCCGATTTGGATCCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAGGAAGGACCACTAGGGCTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTTGTGTACAAGAGCGTTGAGGGTGCCAGAAAGGCGCTGGAAGAGCCTCACAAGGAATTTGAGGGCCATATTTTGCACTGTCAGAAGGCAATAGATGGTCCAAAGCCGGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGACACCACTACATATGTTGGTGGGGCTGCTACCGGACAAGGGCACCTGATGGCGCCAGCAGGACCTGGTATTGGATTTAACCAGCAGGCTGCGGCTGCACAGACCCTAAACCCAGCTCTTGGCCAGGCACTGACAGCACTGCTTGCAACTCAAGGGGCTGGCCTGGGACTGACCAACTTATTGGGAACTCTGGGATCAGCTGCTACAGTAAATCCAGCCGTTCCTTCCGCAGGCCATGGAATGCAGGGTGGTTACAGTAACCAACCAAACATAAGTTCGGGTGTCATTGGTGGATATGGAAATCAAAGCGGCTTACAGGGTACTTATCCAAACCAGCAGGTGGGACAAAGTGGTTCTGGAAGAGGGCAGCATGGTGTTGGCCAATATGGTGGTGTTGCCCCTTACATGGGGCACTAG 1488 0.5155 MGRKRKLTPKPAESFEPPLKQQHQQQQYEPEADQAVEDQNNGADYEEVEVEEEEEVEEEEEEEQEAGEGSGDDNDNADHAQNANDQAAKAQSTSAAATSVTGQYGKEEGEEDDEPIHTLLEPFSKEQILNLLCEAANKHRDVADRVRKVADEDPVHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASVGPVQQPAPVPSTPSQPVSEYTQRKIYVSNVGADLDPQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVEGARKALEEPHKEFEGHILHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNDTTTYVGGAATGQGHLMAPAGPGIGFNQQAAAAQTLNPALGQALTALLATQGAGLGLTNLLGTLGSAATVNPAVPSAGHGMQGGYSNQPNISSGVIGGYGNQSGLQGTYPNQQVGQSGSGRGQHGVGQYGGVAPYMGH 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4644g00023 495 MobiDBLite consensus disorder prediction 333 353 - -
Pral4644g00023 495 SUPERFAMILY RNA-binding domain, RBD 149 242 IPR035979 GO:0003676
Pral4644g00023 495 MobiDBLite consensus disorder prediction 1 113 - -
Pral4644g00023 495 Coils Coil 42 65 - -
Pral4644g00023 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 333 IPR000504 GO:0003723
Pral4644g00023 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Pral4644g00023 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 225 IPR000504 GO:0003723
Pral4644g00023 495 Gene3D - 133 241 IPR012677 -
Pral4644g00023 495 FunFam UBP1-associated protein 2A 150 234 - -
Pral4644g00023 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 40 334 - -
Pral4644g00023 495 MobiDBLite consensus disorder prediction 18 34 - -
Pral4644g00023 495 SMART rrm1_1 158 230 IPR000504 GO:0003723
Pral4644g00023 495 SMART rrm1_1 258 330 IPR000504 GO:0003723
Pral4644g00023 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Pral4644g00023 495 MobiDBLite consensus disorder prediction 40 71 - -
Pral4644g00023 495 MobiDBLite consensus disorder prediction 463 487 - -
Pral4644g00023 495 MobiDBLite consensus disorder prediction 80 101 - -
Pral4644g00023 495 SUPERFAMILY RNA-binding domain, RBD 238 355 IPR035979 GO:0003676
Pral4644g00023 495 MobiDBLite consensus disorder prediction 463 480 - -
Pral4644g00023 495 Gene3D - 245 371 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4644g00023 Pral-Chr4644 110841 112884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4644g00023 256 374 C2H2 Transcription Factor Family AT2G19380 33.607 3.23e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4644g00023 K12741 - qsa:O6P43_006267 594.734