Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4643g00002 ATGAGCGGTCCTGGAGGTATGTCTCAGAAGGATCCGGCTATTAAGCTATTTGGCAGGAAGATTCCGGTGTCGGAATGTCAGATTCCGGCGACCTCTCCAATGCCTCCTCAGATTCCGGCCAACTCCGGAACCATGGATGCTTGCAGTCGCTTGAAGAAAACAGGAGTGGGAAGAGTTTGTTCAGAAAACTCTGAGCAACAAGAGGATGCCTCTGATTTAGCGGCAAGTAAAGAAGGGTCCCAACATAATCAGCTAGAAAATGAGCCCAAAGCCTATCCCAAGACTATGGAAGATAGAATGCAAAATAGCAGCACAGATCAAGATAAGTCATTTAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTTAATCAGCCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGGAATGTTCCAGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCCTCTCAGTTTCGCCATATCATAGTGTCCTCTGATGGAATTTCAACCTCTAGGTTGGAAACCTCAGACTCGTCTAGTCACCAACTTATCTCATCTGCTGAATCTTCTGCTGCTTTCAGGTCTTCGGGGGCAATGGATAATGGTATTGTATTGAAATTCGGTCCAGATGCCCCTCCTCTCTGTGAATCCATGGAAACAATGCTTATTATTAGAGACCAGAAAAGGAAAGTTGATGCAGAAAATGTGAAAGAACAATCTTTATGTGGATCTTCAGTGGCGAATAGTAGTGGTTCTGAACTAGTCATGCAAAAAGAGCACGGTGTTACTAATCAGCTTAGCGCATCAAATCAAATGCAATGTTTCCCTGTTCCTCCACTGTTGTTTCCCTGGAATCCAGATTGGAACAATGTTGTTTCTATGACCGCAATTCATCAATCTTCAGCGCCAATGCAGTGGTATCCAACACCGTTGATGGCAGTTCCCAGCATGTGCCCACGTGGCGTTCCTTTACATTATGCACCGCCATCATATTGGTCCGCTGGCAGCGGCACAGTCTCGATGGGCTCTAATGGTTGCCTTTCACCATCATCGTCGACAAGTAATAGCTGCTGCTCAGGCAATGGCTCTCCAACTTTGGGAAAACACTCTAGAGATGCAGTCTTGGTAGACGAGGAGAAGTCAGAGAAGTGTGTTCTGGTTCCAAAGACTCTTAGGATTGATGATCCAAATGAAGCTTTAAAAAGTCCTATATGGTCTACATTAGGTATAAAGCCTGACAAGAAGGAGTCTGAATCAGAAGTTCGTAGTTCCAAGAAATTGGAAACCGAAGGAGATGGGAAAGACCGTGTGTTGGGCGTTTCTCAAATTTTGGAAGCTAACCCAGCTGCGATCTCTAGGGCGCATGCATTCCAGGAGAGCATACAATGA 1446 0.4516 MSGPGGMSQKDPAIKLFGRKIPVSECQIPATSPMPPQIPANSGTMDACSRLKKTGVGRVCSENSEQQEDASDLAASKEGSQHNQLENEPKAYPKTMEDRMQNSSTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVSSDGISTSRLETSDSSSHQLISSAESSAAFRSSGAMDNGIVLKFGPDAPPLCESMETMLIIRDQKRKVDAENVKEQSLCGSSVANSSGSELVMQKEHGVTNQLSASNQMQCFPVPPLLFPWNPDWNNVVSMTAIHQSSAPMQWYPTPLMAVPSMCPRGVPLHYAPPSYWSAGSGTVSMGSNGCLSPSSSTSNSCCSGNGSPTLGKHSRDAVLVDEEKSEKCVLVPKTLRIDDPNEALKSPIWSTLGIKPDKKESESEVRSSKKLETEGDGKDRVLGVSQILEANPAAISRAHAFQESIQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4643g00002 481 PANTHER CYCLIC DOF FACTOR 2 9 479 IPR045174 GO:0003700|GO:0006355
Pral4643g00002 481 MobiDBLite consensus disorder prediction 26 113 - -
Pral4643g00002 481 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Pral4643g00002 481 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Pral4643g00002 481 MobiDBLite consensus disorder prediction 433 453 - -
Pral4643g00002 481 MobiDBLite consensus disorder prediction 59 88 - -
Pral4643g00002 481 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Pral4643g00002 481 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4643g00002 Pral-Chr4643 3196 6255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4643g00002 11 479 C2C2-Dof Transcription Factor Family AT5G39660 35.465 5.92e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral4643g00002 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4643g00002 - - ccaj:109792807 596.275