Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4640g00016 ATGCCAGAGTTGAGAAGTGGAGCTAGGAGATCAAAGCGGCTTGGTGATCTTCAGCCTGCCCCACAACCTATTGAAGAGAACTGCGCACCAACTGCTCCAAACAAGACCAGAAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGGAATGCCCCAGGTGTAGCGAAAGGAACATCACCAGCAGTACCCACAAGACGAACTGCAGCTGGTAGGGGCCGAGGAGGTAGATTGGTTGATCTTATTCCTGAGCCTGCTGCACTTGGAGCCCCTGAACCTGTTCTTAATCGTGAAGAGGCAGCAGCCAATAATAATATTTTGATGGGGGGTGGAAGTGCTGACAAGGTGGTAGGAGCTGAAGAGGAGGCATGCACAACACCTGTTCCTGAAACGGTACAAGTTGGTAGTTCTCCTTTATATAAGATAGAAACGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTCTATGTTGGCAGAAGGGTGAGTGGCGGATCTGACCGGACAGGTCCTGATGCAATTGAGGTTGCGTTGAAGTTTGAACACAGAAACAGTAAAGGCTGCAATTATGGGCCTCCTTACGAGTGGCAGGTTTACAATACTCTGAATGGTTGCTATGGCATTCCCTGGGTTCATTACAAGGGTCGCCAAGGAGATTTCTATATACTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAGTCGATGTCACCTAGTATGGCTGCATGCATTGCAGTAGAGGCAATATCAATTCTTGAGAAGCTCCATATGAAAGGGTTTGTGCATGGAGATGTTAAACCAGAGAACTTTTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGTTATATCTTATTGATCTTGGTTTGGCATCTAAATGGAAGGACACATCTGGTCAACATGTTGAATATGATCAAAGGCCTGACGTGTTTAGGGGAACCATAAGATATGCCAGTGTACATGCACATTTAGGTAGGACTGGAAGTAGGAGGGACGATCTTGAGTCCTTGGCATATACTTTAATATTTCTTATAAAAGGGAGGTTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAGATGGGCACTTCTCCAGAGTTGATGTGCTACCTTTGTCCTCCTCCTTTCAAGCAGTTCCTTGAAGCTGTTACTAACATGAAATTTGATGAGGAGCCCAACTATTCGAAGCTTATATCATTATTTGATAGCTTGATTGAACCATCTTCTCAATTGAGACCAATCAGAATTGATGGAGCCTTGAAGGCTGGACAAAAGAGGGCCAGAATGCTTATAAATCTTGAAGAAGATGAGCTGCCAAAGAAGAAAGTGCGATTGGGGAATCCTGCTACTCAGTGGATATCAGTGTATAACGCACGGCGTCCCATGAAGCAGAGATATCACTATAATGTATCAGACAGTAGGCTTCGACAGCATGTAGACAAGGGTAATGAGGATGGATTATATATCAGCTGTGTTGCCTCCTCATCAAATCTTTGGGCCCTAACCATGGATGCAGGAACGGGTTTCTCCTCTCAGGTCTATGAGTTATCACCAGTCTTTTTGCATAAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTATATTAGTTCTATAGCTGGTGCAACAAATGGGAGTTCCTTGGTTGTTATGTCCAAAGGAACTCCGTACACCCAGCAGTCCTACAAAGTAAGTGAATCATTTCCTTTCAAATGGATCAATAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACCACTGCTGGCAGTCGATGGGGTGTTGTTATGTCCAGGAATGCAGGGTATTCTGATCAGGTTGTGGAGCTTGACTACTTGTACCCAAGTGAAGGTATTCATCGGCGATGGGAGAATGGTTTCCGGATAACATCTATGGCTGCTACTGCTGATCAGGCAGCCTTCATTCTTAGCATACCAAAACGCAAATTGCTCGATGAAACTCAAGAGACTCTGCGTACCTCTGCCTTCCCTAGCACCCATGTGAAGGAAAAATGGACCAAGAATCTCTATATAGCCTCAATATGTTACGGGCGGACTGTTTGTTAG 2097 0.4497 MPELRSGARRSKRLGDLQPAPQPIEENCAPTAPNKTRRRVGGGRGRGGNAPGVAKGTSPAVPTRRTAAGRGRGGRLVDLIPEPAALGAPEPVLNREEAAANNNILMGGGSADKVVGAEEEACTTPVPETVQVGSSPLYKIETKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASKWKDTSGQHVEYDQRPDVFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMGTSPELMCYLCPPPFKQFLEAVTNMKFDEEPNYSKLISLFDSLIEPSSQLRPIRIDGALKAGQKRARMLINLEEDELPKKKVRLGNPATQWISVYNARRPMKQRYHYNVSDSRLRQHVDKGNEDGLYISCVASSSNLWALTMDAGTGFSSQVYELSPVFLHKDWIMEQWEKNYYISSIAGATNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDYLYPSEGIHRRWENGFRITSMAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWTKNLYIASICYGRTVC 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4640g00016 698 FunFam Casein kinase 1-like protein 110 457 - -
Pral4640g00016 698 SMART serkin_6 138 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4640g00016 698 SUPERFAMILY Protein kinase-like (PK-like) 138 424 IPR011009 -
Pral4640g00016 698 PANTHER CASEIN KINASE-RELATED 139 659 - -
Pral4640g00016 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Pral4640g00016 698 ProSitePatterns Protein kinases ATP-binding region signature. 144 175 IPR017441 GO:0005524
Pral4640g00016 698 ProSiteProfiles Protein kinase domain profile. 138 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4640g00016 698 MobiDBLite consensus disorder prediction 1 75 - -
Pral4640g00016 698 Pfam Protein kinase domain 138 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4640g00016 698 Gene3D Transferase(Phosphotransferase) domain 1 110 456 - -
Pral4640g00016 698 CDD STKc_CK1 138 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4640g00016 Pral-Chr4640 78850 85329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4640g00016 255 411 MAP Kinase Kinase Kinase AT5G50180 26.061 4.75e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pral4640g00016 Pkinase 2.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4640g00016 - - gmx:100801967 1255.35