Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4640g00009 ATGGCTATTGCACGAACGGGAGTCTATGTTGATGACTATTTGGAGTACGCGAGTACCCTGCCTGCGGAGCTTCAAAGGTTGCTCAATACCATCAGAGAACTCGATGACCGATCCCAATCTATGATAAACCGGACGAGGCAGCAGACAAAGCACTGCTTGGGGTTGTCAACTCATGGTTATAAGAAGGGTAATCATTATGGTGGCCATCATTATAATAATAATAATATGAATGAAGAAGATGACATTGCAATTGAGAAAATGCGAAAAGAAATTGAGGCAAATCAGGATAGTGCATTTAGTCTATGTACTGAGAAGGTTTTATTGGCAAGGCAAGCATATGACCTGATAGATAGTCATATAAAGCGACTTGATGAAGATTTGAACAACTTCGCCGAAGATCTAAAGCAAGAGGGGAAAATACCGCCAGATGAACCAGCAATTCTTCCCGCCTTGCCTCTAGTTCTCAAAAGTGAAAGCCGCAGGCCCATATATGGAACACCTCAATCAAAGAGACTTGATTACAGGGATAGAGACTGGGATAGAGAGCGTGATAGGGACTTTGAGCTCATGCCTCCCCCAGGAAGCCATAAAAAGGACTATACAGCTGCAGTGGATTTTGATCAACCAATTGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTTGGCGATATGATTGCTTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCACTATGCTTGTGTTGGCCTTACACCAGAGACAAGATTCAAGGGGAAGTGGTATTGCCCAACCTGCAAATTGCTTCCACAATGTCAATGA 816 0.4338 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINRTRQQTKHCLGLSTHGYKKGNHYGGHHYNNNNMNEEDDIAIEKMRKEIEANQDSAFSLCTEKVLLARQAYDLIDSHIKRLDEDLNNFAEDLKQEGKIPPDEPAILPALPLVLKSESRRPIYGTPQSKRLDYRDRDWDRERDRDFELMPPPGSHKKDYTAAVDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQCQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4640g00009 271 Gene3D - 5 128 - -
Pral4640g00009 271 SUPERFAMILY FYVE/PHD zinc finger 196 265 IPR011011 -
Pral4640g00009 271 PANTHER INHIBITOR OF GROWTH PROTEIN 2 265 IPR028651 -
Pral4640g00009 271 Coils Coil 24 44 - -
Pral4640g00009 271 CDD ING_plant 17 127 - -
Pral4640g00009 271 SMART ING_2 9 130 IPR024610 -
Pral4640g00009 271 Pfam PHD-finger 217 265 IPR019787 -
Pral4640g00009 271 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Pral4640g00009 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 266 IPR013083 -
Pral4640g00009 271 SMART PHD_3 217 265 IPR001965 -
Pral4640g00009 271 FunFam PHD finger protein ING 209 267 - -
Pral4640g00009 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Pral4640g00009 271 CDD PHD_ING 217 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4640g00009 Pral-Chr4640 50370 54063 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4640g00009 ING 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4640g00009 - - lang:109339676 451.825