Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4639g00006 ATGGAAGAGCCGGTCGTGGTGAACAAAGGGGAAGATCAGCCTCTGGATTTGCCGCCGGGGTTCAGATTCCACCCCACCGATGAGGAGATCATTACTTGTTATCTCACCGAGAAGGTTCTCAATAGCAGTTTCAGTGCAACTGCCGTCGGAGAGGCTGATTTGAACAAGTGCGAGCCTTGGGACTTGCCCAAGAAAGCCAAGATGGGTGAGAAAGAGTGGTACTTCTTCTGCCAAAGGGATAGGAAGTATCCGACGGGCATGAGGACAAATCGAGCCACCGATTCCGGTTACTGGAAGGCCACCGGAAAAGATAAGGAGATTTACAAAGGGAAAGGCAACCTCGTTGGGATGAAGAAGACCCTCGTCTTCTACCGAGGGAGAGCTCCTAAAGGAGAGAAAACCAACTGGGTTATGCATGAGTTCAGATTGGAAGGCAAATTCGCCACTTACAATCTCCCCAAGGCTGCCAAGGACGAATGGGTTGTAAGCAAGGTTTTCCACAAGAACTCTGATGTCAAAAAGAGCCCAATTCAAGGCCTTTTGAGGATCAACTCTCTCGGTGATGATTTGCTCGACTGTTCATCACTCCCACCTCTCATGGATCCTTCTTTCAAGCCTTCCTATGGCGACGGTGCCTTCAAGGGGACCAACCCATCCCCACCCGTGTCATCATCTAAACCATCTGACGGCTATTATGTTCCCAACCTCTCCATCATCAACAATCACCAGCAGCCGCCGCAGCAGCTGATGATGAAGCCTCAAGCTATGATGACGCCCACCAATAACAATTACACCATCAATCAAGCCACTTCCAATTTCGTCAATGACTCGCTTTCGCATCCTCAGATTCAAATCCAAAATCCGAGCTTCTCCTTTCAGCAGAATAATCCAGGCTATGTGATGAGTAATGACCAGCAGCGGGCGTTTCTGAGGGCATTTGCAGCCAATAACAACGGCGGCTTGTTCGGGTTGGACAAACTCTGCAAGACGGAGCCGTTGGTGTCGTCCGGCAATCAATCTGTGGTGAGCGTGTCGCAGGATACTGGCCTCAGCAACGACAGAAACGCCGACACTTCCTCGGCTGTTTCCAAGCTCGACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGAGGCTCCACCAGCTGTGCCCCTTTCTGAGTTGGAATGCCTTTGGGACTACTGA 1185 0.5072 MEEPVVVNKGEDQPLDLPPGFRFHPTDEEIITCYLTEKVLNSSFSATAVGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATYNLPKAAKDEWVVSKVFHKNSDVKKSPIQGLLRINSLGDDLLDCSSLPPLMDPSFKPSYGDGAFKGTNPSPPVSSSKPSDGYYVPNLSIINNHQQPPQQLMMKPQAMMTPTNNNYTINQATSNFVNDSLSHPQIQIQNPSFSFQQNNPGYVMSNDQQRAFLRAFAANNNGGLFGLDKLCKTEPLVSSGNQSVVSVSQDTGLSNDRNADTSSAVSKLDMGRNKALYEDLEAPPAVPLSELECLWDY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4639g00006 394 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Pral4639g00006 394 FunFam NAC domain-containing protein 100-like 26 172 - -
Pral4639g00006 394 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Pral4639g00006 394 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 286 - -
Pral4639g00006 394 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Pral4639g00006 394 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4639g00006 Pral-Chr4639 43549 45637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4639g00006 1 243 NAC Transcription Factor Family AT5G18270 68.127 4.78e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4639g00006 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4639g00006 - - aprc:113861501 471.085