Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4637g00020 ATGCGTGGTGTTATTAACCCGGCCGGAGGTTCCAAGCTGCATAGCCGTGTTGCTGAGAAGACAAATAACGGGAAACGTGAAAAAGAAATATTCCCTGTTCAAATGGTTGAAAACTCTTACCTCCTCTCAATTAACTTTGGTCAAATGACAAGAATTCCCACCACTTACATTGTCACGAAGAGGCAGAGAGAGTTAAAGAAAGAATTGAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTTTCTCTTCTGATGAAGCGTCGGAGGAGGAGAAAAAGCAAGATTTCTTCATTCCTTCTGGATTATTCCCATCGCTATCACAGACCCAAACACAAGAAGACACTTCGGCCTCTCCCTTTCCCTATCTTATCAGCTCCACTAGCACCCCCTTCCCAATCCCACAAGTAACAACCTCTTCTGGTTTGATTGAGACTCAGATCAGCTCATCCCAGAATCTTCCACAAGGGAATGTTATAGAAAGGAAAAAACATTATAGAGGAGTTAGGCAGAGACCGTGGGGGAAATGGGCCGCCGAAATCCGAGACCCGAACAAAGCAGCAAGAGTGTGGCTTGGCACGTTTGATACGGCAGAGGATGCTGCGGCGGCTTATGATGCTGCGGCTTTGAAGTTCAAAGGCAATAAAGCCAAGCTCAATTTCCCTGAACGTGTAGCTAATTTTCAATCTCATCAAACTTCAGCTCCTCCCCCTCGTCGTCAGCCTCCATCTGAGGCGGTGCCGCTGCCGGATTCTCAGCCACCATGGCAGCCGCCTCCTCCGTCGGACGAGGGGTTTCCAAACCTAATGCAGTACGCTCAGGTGCTTCGGAGTAGGGATGATGATGATCTACAGCGAGCTGCTTCGGGTCTCTATAATTATCAGAGCGTTAATGAGTCACTTCTTTATGATTCTTCTTCATTCTTCTCACCGTCATCGGCAGTGACTTCATCTTCTTCCACGGCTGGGTCTGATCAATTTCACGGTGAACAAGTAATGGGAGATCGTGGGTTTTCGGGTTCTTATTATTTTTTTGATAAAGGGACTGATGATTTTGATGGAAGACACACGAGGTGA 1071 0.4725 MRGVINPAGGSKLHSRVAEKTNNGKREKEIFPVQMVENSYLLSINFGQMTRIPTTYIVTKRQRELKKELNKVDRRHGKRPFSSDEASEEEKKQDFFIPSGLFPSLSQTQTQEDTSASPFPYLISSTSTPFPIPQVTTSSGLIETQISSSQNLPQGNVIERKKHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVANFQSHQTSAPPPRRQPPSEAVPLPDSQPPWQPPPPSDEGFPNLMQYAQVLRSRDDDDLQRAASGLYNYQSVNESLLYDSSSFFSPSSAVTSSSSTAGSDQFHGEQVMGDRGFSGSYYFFDKGTDDFDGRHTR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4637g00020 356 MobiDBLite consensus disorder prediction 311 330 - -
Pral4637g00020 356 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Pral4637g00020 356 MobiDBLite consensus disorder prediction 311 325 - -
Pral4637g00020 356 MobiDBLite consensus disorder prediction 226 265 - -
Pral4637g00020 356 MobiDBLite consensus disorder prediction 234 263 - -
Pral4637g00020 356 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Pral4637g00020 356 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Pral4637g00020 356 Pfam AP2 domain 163 212 IPR001471 GO:0003700|GO:0006355
Pral4637g00020 356 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Pral4637g00020 356 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Pral4637g00020 356 PANTHER DNA-BINDING DOMAIN 106 291 IPR044808 GO:0003700|GO:0009873
Pral4637g00020 356 MobiDBLite consensus disorder prediction 68 92 - -
Pral4637g00020 356 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Pral4637g00020 356 MobiDBLite consensus disorder prediction 1 25 - -
Pral4637g00020 356 Gene3D AP2/ERF domain 162 222 IPR036955 GO:0003700|GO:0006355
Pral4637g00020 356 FunFam Ethylene-responsive transcription factor 2 162 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4637g00020 Pral-Chr4637 116156 122080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4637g00020 160 290 AP2-EREBP Transcription Factor Family AT5G13330 54.412 1.28e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4637g00020 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4637g00020 - - pcin:129305564 228.409