Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4623g00067 ATGGAAATGGCTTCTAGTCCGCGCACCGTGGAGGAAATCTTCAAGGATTACAGTGCTCGAAGAGCCGGTGTTGTTCGCGCTTTGACTCAAGATGTGGATGAATTTTACGGGCTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGGCATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTCCCCCCGGAGCTTCCTGAGCCAGCTCTTGGAATCAACTTTGCCAGGGATGGCATGATTCGCAGGGACTGGCTTTCTCTTGTCGCTGTTCATAGTGATTCATGGCTGCTTTCGGTGGCATTTTATCTTGGGGCCCGTCTCAACCGCAATGAAAGGAAGCGCTTATTTAGCTTGATCAACGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCCATAAAGGACAAGCCAACAGTGGACAGTGGAAGCAAGTCCCGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAGTTCACAGATGAGGGTTATGATGAGGATGAGGATGAGCATAGCGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATTGGCTGCGATGTCTGTGAGAGGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCCTGCATGAGGAGGGGCAAGCCCTAG 717 0.4923 MEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMIRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFTDEGYDEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4623g00067 238 CDD PHD_AL_plant 185 235 IPR044104 -
Pral4623g00067 238 FunFam PHD finger alfin-like protein 178 234 - -
Pral4623g00067 238 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Pral4623g00067 238 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Pral4623g00067 238 SMART PHD_3 185 233 IPR001965 -
Pral4623g00067 238 MobiDBLite consensus disorder prediction 140 178 - -
Pral4623g00067 238 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Pral4623g00067 238 Pfam PHD-finger 186 234 IPR019787 -
Pral4623g00067 238 MobiDBLite consensus disorder prediction 148 166 - -
Pral4623g00067 238 PANTHER CPG BINDING PROTEIN 6 234 IPR045104 GO:0006355|GO:0042393
Pral4623g00067 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Pral4623g00067 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4623g00067 Pral-Chr4623 837753 840850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4623g00067 4 232 Alfin-like Transcription Factor Family AT5G05610 79.565 1.94e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral4623g00067 Alfin 4.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4623g00067 K26274 - qsa:O6P43_026231 464.151