Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4623g00010 ATGAGACCAATAATGGTAGAGTTGCAGAAAAGCTTGAGAGCTTCTTCTCCGTTTAGTCTTGTTCTGTTATTAGTATTATTATGGCTTAACATCACAGTAAGGCCTTCCATGGCGGCCACAAAAACAGTACCAGTAGGAGTCATTCTTGATCTGAACTCAAGACTCGGTAAAATGGTGAACAACAGCCTCGCCCTCGCCGTCGAAAATTACTACCTCGTTCATAACAATACAGCCACCAAGATCACGCTTGTGGTCTGGAATGTTTCTCAGGACAACATCATCATAGCGGCAAACAGAGCTTATCGTCTCATGCATGATGTGAAAGTACGTGCCCTGTTGGGGCCCCAGAATTCAGAGCAAGCAAGGTATATTGTGAGACTTGGTGAGCAATTACAGGTACCTGTCATTTGGTTTCCCATAACTGGTCCATCTCTTTTGCCACCGCCATCTCCATCCTCCATCTACATCGGTCAAGGCCTTAATTGCTATCAGTTCCAAGCCATAGCCGCCAGTCTTAAAGCTCTTGGGTGGCAATCAATCGTCCCCATTTATGAAGAGACTGAATATGGCAGTCATCTTGTTCCATGCCTCACGAATGTCTTGAAAGAGATGGGCATACGAATGGCTAACGTAACTGCCATTGCTTCAAATTCATCAGATCGTGACATTGACGACATTCTCCTCAAGTTAAACAACATGCGAACACATGTATTTCTTGTCCATATGAGCATGGATCTCGGAACAACATTTGTTTTATCTGCACAAAGAAAAGAGATGATGGGTGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTCAAGTTACAGTCACGAGAAACTTGTATACTGGCCAGGTCCTATCTGGCAGTTTTACTGATTTCTTTGCTTTGAAAAGGTATATGCAAGGTGCATTGGGAGTGAGGCCAATGGATTCTAACAAAACAGATGCGCGTAAGGGGATAGAGAATAATTTCACTGCTAAGTTCGGAGGAGCTAGCCTAACTATCTATGGATGGTGGGCTTATCACACAATCGAAGCATTGGCTATGGCATTAGAGAAGCCAGGCGCAGACAATAATGGCACAAAACTTCGAAGTGAAATTCTGGCTACTAATTTCACAGGCGTGTCAGGGATAAATTTTAATTTAAAAGGAGGACAACTAGATCAATCAGTGCTTGAAGTATACAATGTGGTGGGAACAAGAGAAAGGATCATCGGATCTTGGAACCCCAAAGATGGATTTGTTCAAAATAATAGTAAAAGTGGCGAGGTATCTGGTGATGGATACCAACTAAGTGGTCCTCTGGCACTGTGGCCGGGTGACACATTGGATAAACCACCAAAGTTGAGAATAGGAGTCCCAAGAACAAATTCTTTTCCTGAATTTGTGAATGTGGATAATTCTAGTAAGCTTCTGATTGATGGCTTTGCTATTAATGTGTTCCTAAAAGCTATCGGTGTTTTGCCGTTTCTGTTAAATAATTATGAGTTTGTTCTTTTGCCGAACAAAAACGCAAGCGATACTCCCACAAACTATGATGATCTTCTCTGCAGCCAAATGAAAGACGAGGATCTTGATGCTATAATTGGAGACATCGCAATTGTAACAAAACGCACAAACTGTGTTGATTTCACGTTGCCGTATCTAGATTCAAGTGTAGCAATGGTGGTAAGGGCGAAGGCCTACAGAAGTAAGGGAATCCTCTTCAAACCTTTCGATTGGTCACTATGGTTAATTCTTGGTGGGATTTTTGTGGGCGCAACAATTATCATAATTATGTTAGAAAGAAACAAAACCAACGAAAAAGACAAAACCAATGAAGAAGACAAAACCAAAGAATTTCGCTCCAACCCTTTCCTTGTTTACAAGATGGATGCGATGGAGTTTAAAAGCAAATCTGCAGGATGGATGGTGATACTGACGTCACTCCTATTCATCTTAGTAGTGCAAGTTTACACGGCGAATTTGACTTCAATTTTAACACAAGGAGAGAAGAAAAAGCCTGAATTTAAGGACGAAAATGAGGTTAAAAGTAGCAATGTGTTTGTGGGACATCGAAATGGGTCGTGGGTGAAAGGGCTTCTAATTAACCAAATGGGATTCGACCCGTCTCGATTAAAGCCTCTAGCAACTCGTGAAGAGTACAATTTATCATTGTCAAATGGAATAGTGGGAGCTATTTTTGATGAAACTCCCTATCTCACGCTCTTTCTCTCCAGATATAGATCTGGCTTCATGATGGCAGGACCAATCCATAAAACTGGTGGACTTGCATTTGCATTCCCAAAGAAATCTAGCCTGGCCTTGCATTTCTCGAATGCAATCTTAAAGGTGACTCAAGATGCGGAGCCATATCGTGTGCTGATGGCCAGGAGCTCCTTACCCACCTCCATTGAAGATCTCATTTTTGAAGACCAAAGTGATACTGAGACGACAAGTTTGAAAATAGATAACTTTGGCGGCCTTTACCCGTCCTAA 2496 0.4203 MRPIMVELQKSLRASSPFSLVLLLVLLWLNITVRPSMAATKTVPVGVILDLNSRLGKMVNNSLALAVENYYLVHNNTATKITLVVWNVSQDNIIIAANRAYRLMHDVKVRALLGPQNSEQARYIVRLGEQLQVPVIWFPITGPSLLPPPSPSSIYIGQGLNCYQFQAIAASLKALGWQSIVPIYEETEYGSHLVPCLTNVLKEMGIRMANVTAIASNSSDRDIDDILLKLNNMRTHVFLVHMSMDLGTTFVLSAQRKEMMGEGYAWILTQELSSLTDPQVTVTRNLYTGQVLSGSFTDFFALKRYMQGALGVRPMDSNKTDARKGIENNFTAKFGGASLTIYGWWAYHTIEALAMALEKPGADNNGTKLRSEILATNFTGVSGINFNLKGGQLDQSVLEVYNVVGTRERIIGSWNPKDGFVQNNSKSGEVSGDGYQLSGPLALWPGDTLDKPPKLRIGVPRTNSFPEFVNVDNSSKLLIDGFAINVFLKAIGVLPFLLNNYEFVLLPNKNASDTPTNYDDLLCSQMKDEDLDAIIGDIAIVTKRTNCVDFTLPYLDSSVAMVVRAKAYRSKGILFKPFDWSLWLILGGIFVGATIIIIMLERNKTNEKDKTNEEDKTKEFRSNPFLVYKMDAMEFKSKSAGWMVILTSLLFILVVQVYTANLTSILTQGEKKKPEFKDENEVKSSNVFVGHRNGSWVKGLLINQMGFDPSRLKPLATREEYNLSLSNGIVGAIFDETPYLTLFLSRYRSGFMMAGPIHKTGGLAFAFPKKSSLALHFSNAILKVTQDAEPYRVLMARSSLPTSIEDLIFEDQSDTETTSLKIDNFGGLYPS 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4623g00010 831 Gene3D - 574 693 - -
Pral4623g00010 831 Gene3D - 451 573 - -
Pral4623g00010 831 SUPERFAMILY Periplasmic binding protein-like I 35 445 IPR028082 -
Pral4623g00010 831 Pfam Ligand-gated ion channel 789 829 IPR001320 GO:0015276|GO:0016020
Pral4623g00010 831 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 829 IPR015683 -
Pral4623g00010 831 SUPERFAMILY Periplasmic binding protein-like II 448 788 - -
Pral4623g00010 831 Gene3D - 35 158 - -
Pral4623g00010 831 SMART GluR_14 456 791 IPR001320 GO:0015276|GO:0016020
Pral4623g00010 831 Pfam Bacterial extracellular solute-binding proteins, family 3 523 788 IPR001638 -
Pral4623g00010 831 Gene3D - 163 352 - -
Pral4623g00010 831 Pfam Receptor family ligand binding region 60 404 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4623g00010 Pral-Chr4623 174643 179228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4623g00010 40 807 Ion Channels AT2G29120 31.411 2.52e-108 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4623g00010 K05387 - qsu:111985484 481.87