Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4621g00003 ATGGCGGCAGAGTTGCAGAAAAGCTTGAAAGCTTGTTTTGCGTCAAGCATGAGTGTGGTCTTAGCACTGTTATGGCTTAGAGCTTCTTCCATGGCGGCCGAACCAGATGGAGTGCCCGTAGGCGTCATTCTTGATCTGAATTCAACATTTGGTTCCAAAGTTAGCCGCAGCCTCATCTTCGCCGTCGAAGACTACTATTCCACTAATAACCGTACAGCCACCAGGATTGAACTTATAGTCCAGGATGTTCCTCGGAACGACGTCGTCGCCGCGGAAAGAGCAGCTTACTATCTGATAAAGAATAGAACAGTATGTGCCATCTTGGGGCCCCAAAACCCGGAGCAAGCAAGGTTTGTAGTGGAACTTGGTAAGAAACACGAAGTACCTGTCATTTGGTTTCCCATAACTGGTCCATCTCTTTTGCCCCCTCCATCTCCGTCCTCCATTTACTCCGATCAAGGCCTTGACTGCTTTCAATTCCAAGCCATCGCTAAGGTTATTGAAGCTCTTGGTTGGCAATCAATCGTCCCCATTTATGAAGACACTGAATATGGCAGTCACCTTGTGCCATGCCTCTCCAATGTCTTGAAAGGTATGGGCATACGAATGGCTGATGTAATTGCTGTTGATTCAAATTCATCAGATGTTGAAATTGACGACATTCTCCTCGAGTTAAAGGACATGCGCACACATGTATTTCTTGTCCATATGAGCATGGATCTCGGAGCAAGATTTGTTTTTTCTGCAGAAGAACAAGACATGATGGGTGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTCGAGTTAATACTACCAGAAGATTGTATTATACCCAAAACATATATAGGAACATTACTGATCCTGTTGCTTTGAAAAGATACATGCAAGGTGCATTGGGAGTGAGGCCAATGGATTTGATCCCCAAAAAAACACCTATGCGTAGGGGGAGAGAGAAGAATTTCACTGATAGGTTCAGGACTACCCTAACTGTCTATGGATGGTGGGCCTATCACACAATCGAAGTATTGGCTACGGTGGTGGAGAAGCAAGGCGCAAACAATGGCATAAAACTTCGCTGCGAAGAAATAATTCAGGAGGCTACTCATTTCAAAAGCCAGTCAGGGGTAAATTTTAATTTAAGAAATGGACAACTAGATCAATCAGAGCTTGAAGTATACAATGTGATAGGAGACAGAGAAAGGATAATCGGATGTTGGAGCCCTAAAACTAAACTTGTTCAAAATTGTAGTAAAGGTGGTAAGACATCTGATGGTGAATACCCACTGAAAGATCCACTATGGCCGGGCGACACATTGGATAAACCACCCAAGTTGAGAATTGGAGTCCCTAAAACAAATTCTTTTCATGAATTTGTGAGTGCATATAATTTAAGTAAGCTTCAGATTGATAGTGGTGGCTTTGCTGTTAATGTGTTCTTAAAAGCAGTGCAGGTTTTGCCATTTCCATTAAATAATTATGAGTTTGTTCACTTGACAAGTACTGACATAACCTTTGATGATCTTCTCTGCAACCAATTGCTGAGAGTGAGGGATCTTGATGCTATAATTGGAGACATCACAATTGTGGAAAACCGCACAGAATGCGTTGACTTCACGTTGCCGTATTTAGATTCAAGAGTGGCTATGGTGGTAAGGGTGAAGAAGGACACCACAAGTAAATGGATCCTCTTGAAACCTTTCAACTGGTTACTGTGGTTAATTCTTGTTGCCGTTTTTATGGGTGCAACTGTTATCATAATCATATTAGAAAGAAACAAAACCACCAAAACCAGTGAAGGAAGAAAAAAAACTGAAGAATTCTATTACAACCCCTTCCTTGTTTACAAGATCGATGCTATGGAGAAACTTAAAAGCAGAGCTGCAGGATGGATGGTGATACTGACGTCATTCCTATTCATCTTGGTAGTGCAAGTCTACACAGCAAGTTTAACTTCAATGTTAACACAAGGAAAGACGAAAGTGCCTTCATTTGAGAACGAAAAAGAGCTTATTAAGAATAGCAATCTGCATGTGGGATATCGAGATGGATCGTGGGTGAGAGGGCTTTTGATTGAACAAATGGGATTCAAGCCTGAGCAGTTAAAGCCTTTACGACATCGTGAAGAGTATAATGAAGCATTGTCAAATGGAACAATAGATGCTATCTTTGATGAAACTCCTTATCTCACACTCTTTCTCTCCAAATACAAGTCTCAATTCATGATGACAGGACCACTCTACAAAACCGGTGGATTTGCTTTTGCATTCCCAAAGAAATCTAGCCTGGTCTCGCATTTCTCGAATGCAATCTTAAAAGTGATTCAAGATGTGGAGTCATATCGACTATTAATGGCCAAGAGCTCCTTACCCACCTCCATTGAAGATTTGGAATTTGAAGACCAAAGTGATATAGAGACATCAAGTTTGAGCATAACTAACTTCGGAGGCCTTTACCCTGTCCTATCATCTCTTGTGGCCCTCTCTTTAGGCCTTTCCATTATAAATCCATCAGTGATTAAACGGTCTCTGAATCCATTGCCAGTGATTACATGGTTGCTTAGGAAGCTTTCCACTCTGAAACAGTTGGTGATTGAATGGTTGCGCAATAAGAAGCAGCATTTCAAGTTAGCTAAGGCTTGA 2658 0.4172 MAAELQKSLKACFASSMSVVLALLWLRASSMAAEPDGVPVGVILDLNSTFGSKVSRSLIFAVEDYYSTNNRTATRIELIVQDVPRNDVVAAERAAYYLIKNRTVCAILGPQNPEQARFVVELGKKHEVPVIWFPITGPSLLPPPSPSSIYSDQGLDCFQFQAIAKVIEALGWQSIVPIYEDTEYGSHLVPCLSNVLKGMGIRMADVIAVDSNSSDVEIDDILLELKDMRTHVFLVHMSMDLGARFVFSAEEQDMMGEGYAWILTQELSSLTDPRVNTTRRLYYTQNIYRNITDPVALKRYMQGALGVRPMDLIPKKTPMRRGREKNFTDRFRTTLTVYGWWAYHTIEVLATVVEKQGANNGIKLRCEEIIQEATHFKSQSGVNFNLRNGQLDQSELEVYNVIGDRERIIGCWSPKTKLVQNCSKGGKTSDGEYPLKDPLWPGDTLDKPPKLRIGVPKTNSFHEFVSAYNLSKLQIDSGGFAVNVFLKAVQVLPFPLNNYEFVHLTSTDITFDDLLCNQLLRVRDLDAIIGDITIVENRTECVDFTLPYLDSRVAMVVRVKKDTTSKWILLKPFNWLLWLILVAVFMGATVIIIILERNKTTKTSEGRKKTEEFYYNPFLVYKIDAMEKLKSRAAGWMVILTSFLFILVVQVYTASLTSMLTQGKTKVPSFENEKELIKNSNLHVGYRDGSWVRGLLIEQMGFKPEQLKPLRHREEYNEALSNGTIDAIFDETPYLTLFLSKYKSQFMMTGPLYKTGGFAFAFPKKSSLVSHFSNAILKVIQDVESYRLLMAKSSLPTSIEDLEFEDQSDIETSSLSITNFGGLYPVLSSLVALSLGLSIINPSVIKRSLNPLPVITWLLRKLSTLKQLVIEWLRNKKQHFKLAKA 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4621g00003 885 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 839 IPR015683 -
Pral4621g00003 885 SUPERFAMILY Periplasmic binding protein-like I 33 413 IPR028082 -
Pral4621g00003 885 Pfam Bacterial extracellular solute-binding proteins, family 3 510 788 IPR001638 -
Pral4621g00003 885 Pfam Receptor family ligand binding region 56 392 IPR001828 -
Pral4621g00003 885 Gene3D - 566 687 - -
Pral4621g00003 885 Gene3D - 693 791 - -
Pral4621g00003 885 Gene3D - 443 565 - -
Pral4621g00003 885 SMART GluR_14 450 790 IPR001320 GO:0015276|GO:0016020
Pral4621g00003 885 Pfam Ligand-gated ion channel 789 827 IPR001320 GO:0015276|GO:0016020
Pral4621g00003 885 SUPERFAMILY Periplasmic binding protein-like II 447 782 - -
Pral4621g00003 885 Gene3D - 158 350 - -
Pral4621g00003 885 Gene3D - 34 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4621g00003 Pral-Chr4621 27082 31527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4621g00003 38 802 Ion Channels AT2G29120 33.624 3.72e-115 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4621g00003 K05387 - qsa:O6P43_022275 499.59