Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4618g00034 ATGGAAGCCAGCGCCGGACTTGTCGCTGGGTCTCACAACCGCAACGAGCTCGTCGTCATTCACGGCCATGAAGAGCCGAAGCCTTTGAAGAATTTAGATGGCCAGGTCTGTGAGATATGTGGCGACGACGTCGGACTCACCGTCGACGGCGACTTGTTTGTCGCCTGTAATGAGTGTGGCTTCCCGGTTTGCCGTCCCTGCTATGAATATGAACGACGAGAAGGCAGCCAACTCTGCCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGAAGTCCCAGGGTGGAGGGAGACGAAGATGAGGAGGACGTGGATGACATTGAACACGAATTCAAAATCGCAGACGAGAAGAACAAGCATAACCATATGGCAGAAGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGCCCTGAAGATGACGACAATGCTCAATTCCCTCCTGTCATCGCCGGAAACCGCTCCCGTCCGGTCAGTGGCGAATTCCCAATATCATCCCATGCTTATGGAGACCAGATGCTCTCCTCTTCTCTGCACAAACGCATTCATCCCTATCCAGTTTCTGAACCTGGAAGTGCAAGAGGAGACGAGAAATACGAAGATGGCTGGAAAGATAGAATGGACGACTGGAAACTCCAGCAAGGAAACTTGGGACCTGAACCAGATGAAGATCCAGATGCAGTTTTGTTAGATGAAGCGAGGCAGCCATTGTCAAGGAAAGTGCCAATAGCATCGAGCAAGATTAATCCGTATAGAATGGTGATAGTGGCACGTCTTGTGATTCTGGGCTTCTTCCTTCGATATAGAATTATAAACCCTGTTCATGACGCCATAGGCCTGTGGCTCACCTCCATTATCTGTGAAATCTGGTTTGCTTTCTCCTGGATCCTCGATCAGTTCCCTAAGTGGTTCCCCATTGATCGTGAGACCTACCTCGATCGTCTTTCCGTCAGATATGAAAGAGAAGGAGAGCCGAACCTCCTGGCACCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCACCGTTGGTGACGGCAAACACGATTCTGTCGATATTGTCGATGGATTATCCGGTGGATAAGATATCATGTTACATTTCAGACGATGGAGCTTCCATGTGCACGTTCGAAGCACTCTCAGAAACAGCAGAATTTGCAAAGAAGTGGGTTCCGTTTTGTAAGAAGTTCAACATTGAGCCTCGAGCTCCGGAGATGTACTTCTCGGAGAAGATCGATTACCTGAAAGATAAGGTTCAGCCCACTTTTGTCAAGGAGCGTCGAGCAATGAAGAGAGAATACGAAGAGTTCAAGGTGAGAGTGAATGCACTTGTGGCGAAAGCCCAGAAGGTTCCACCAGGAGGATGGATTATGCAGGATGGGACTCCATGGCCAGGCAACAACACCAAGGACCATCCTGGAATGATCCAAGTCTTTCTCGGTCACAGCGGAGGCTGCGACACCGATGGCAACCTTCTTCCTCGCCTCGTTTATGTCTCCAGAGAGAAAAGGCCTGGTTTTGCTCACCACAAGAAAGCCGGCGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTGCTTACAAATGCTCCTTTCATGCTCAACTTGGATTGTGATCACTATATTAATAACAGCAAGGCCGTCAGAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGAAAGAAAGTCTGCTATGTCCAGTTCCCTCAAAGATTTGATGGCATTGACAGGAACGATCGTTATGCCAACAGGAACACAGTTTTCTTCGATATTAACATGAAGGGTCTAGATGGTATCCAGGGTCCTGTGTATGTGGGAACTGGATGTGTTTTCAGGAGGCAAGCTTTATATGGATACAGTCCTCCAAAGGGTCCTAAACGCCCCAAGATGGTGAGTTGTGATTGCTGCCCATGTTTTGGACGCAGGAGGAAAGAAAAGTACGCAAAGGATGGTGCAAATGCAGAGTCTGCAATGCTACAACAAGGAATGGAAGATGATAAAGAGTTGCTCATGTCTCAGATGAATTTTGAAAAGAAATTTGGGCAATCATCTATCTTTGTGACTTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCTTCAAGCCCAGCAGCCCTGCTCAAAGAAGCAATTCATGTCATAAGCTGTGGCTATGAGGATAAAACCGAATGGGGAACTGAGCTGGGTTGGATCTATGGATCTATTACAGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGGTCTATTTACTGCATGCCAAAGAGACCTGCATTCAAGGGTACAGCTCCAATCAACTTGTCAGATAGGCTGAACCAGGTGCTTCGTTGGGCTCTGGGTTCGATTGAGATCTTCTTCAGTCCCCATTGCCCTGCATGGTATGGCTACAAGGGTGGCAACAAGCTCAAGTGGCTGGAGCGATTTGCCTATGTCAACACCACTGTCTACCCCTTCACCTCCCTTCCTCTGCTTGCCTACTGTATTCTTCCTGCTATTTGCTTGCTCACCGACAAGTTCATCATGCCACCGATAAGCACTTTCGCCGGTTTGTACTTCGTTGCTTTGTTCTCTTCCATCATTGCGACGGGCCTGCTCGAGTTGAAATGGAGTGGAGTAAGCATAGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTATTTGCTGTCATACAGGGTCTTCTGAAGGTGCTAGCTGGAATAGACACAAACTTCACTGTTACATCAAAGGCAGCAGATGATGAGGAATTTGGAGAATTATACTCCTTTAAATGGACCACTCTCCTAATCCCACCAACCACTATACTAATCATCAATATTGTTGGTGTCGTTGCTGGAATCTCTGATGCAATCAACAATGGCTACCAATCCTGGGGACCCCTATTTGGAAAGCTCTTCTTTTCCTTCTGGGTCATTGTTCATCTCTACCCATTCCTTAAAGGTTTGATGGGAAGGCAAAACCGAACACCCACCATTGTGGTCATATGGTCAGTGCTCTTGGCTTCTATTTTCTCCCTACTTTGGGTCAGAATTGACCCATTTGTGATGAAAGCTAAGGGCCCTGATACTAAGATGTGTGGAATCAACTGCTAA 3126 0.4776 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFKIADEKNKHNHMAEAMLHGKMSYGRGPEDDDNAQFPPVIAGNRSRPVSGEFPISSHAYGDQMLSSSLHKRIHPYPVSEPGSARGDEKYEDGWKDRMDDWKLQQGNLGPEPDEDPDAVLLDEARQPLSRKVPIASSKINPYRMVIVARLVILGFFLRYRIINPVHDAIGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSVRYEREGEPNLLAPVDVFVSTVDPMKEPPLVTANTILSILSMDYPVDKISCYISDDGASMCTFEALSETAEFAKKWVPFCKKFNIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTDGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKMVSCDCCPCFGRRRKEKYAKDGANAESAMLQQGMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYSFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKAKGPDTKMCGINC 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4618g00034 1041 SUPERFAMILY RING/U-box 21 105 - -
Pral4618g00034 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Pral4618g00034 1041 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 622 IPR029044 -
Pral4618g00034 1041 CDD mRING-HC-C4C4_CesA 35 85 - -
Pral4618g00034 1041 MobiDBLite consensus disorder prediction 136 164 - -
Pral4618g00034 1041 FunFam Cellulose synthase 19 110 - -
Pral4618g00034 1041 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Pral4618g00034 1041 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 821 IPR029044 -
Pral4618g00034 1041 FunFam Cellulose synthase 448 622 - -
Pral4618g00034 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 234 1008 - -
Pral4618g00034 1041 Coils Coil 429 449 - -
Pral4618g00034 1041 Pfam Cellulose synthase 331 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pral4618g00034 1041 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4618g00034 Pral-Chr4618 347695 353229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4618g00034 1 1041 Cell Wall Biosynthesis AT5G17420 85.221 0.0 1835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4618g00034 K10999 - gmx:100815436 1999.56