Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4618g00026 ATGGAGTTTAACTTTCGTGCGGGGGATCTGAGGACACCGTCTTTTCAACTCCCTTCTCTGGTACAAAGCCATTTCTCCGACCCCTCCTTGTTGCGAGGTTTGTATTGTGGTTTTCCGGTGCCGAACACTGAGCAAATACGGAATCCGAACGCCCACGGCGATGATATACTAAGGAAGCTGGAGAAAGAGCGAATCAGGCAAGAGATAATCTCCGGCGAGATAGCGAGGAGGCGAATGCTGGAGGAGGAAGTAAGAAGAGAGCTGATGCTGGAGAGAGAACTGGCTTTCCGAAGGAGTTTGGGAGAAAAGTTCTTGCTTGATGAGCAGATGGCAATAGGCTTGAATCCCAGACTCAACGTAATTCCTGCTTATGATACCCGCCCACTTGGGGAACGAATCTCATTTCCGCAAACTGTGCCCCAACTTGCTCAATCTGTGAAACCTGCTGATCCTAAGATTAACATGGAAAAATTGATCATGCTGGCTCAGCCAAGCCCAGAAATGTATAGACAAAAGCGGAAAGCTGTGAAACAAGATGCTGATGATGATGCAGAGCATTGTCCAGTTGTGAACAAAAAACCGAAGGATGACTGGAGCTGTGAACTATGTAGTGTGCGTGTCACAAGTGAGAAAGCTTTCAACGAACACCTTCAAGGTAAAAAGCACAAGGCTAGGGAATCTGCAAAAAAGAGAATGCAGAAGACCGATACGAATGCTGGCTCATCATCAACATCAAAGAACGTCGAACACTCTCCGAAACCTATTGAAACTACTGTGACCGCTACAACTTCAGATTTGGAAGCCGATGTTCAAGCTCAACCTGAAGTGACAAGGGTAGGCAAAGATGTTGTGGAAGTCAAAACCAAAGATGAGGAGGTTGTGGTGAAGATCCAAAGTACACAAGATGCAGAAAAGCAAAAGGGGACTGAGGCAGAGCAGGCAAGGATACCAGACGCAGTGAACAAGAGATACAAGTTTTGGTGTGACCTCTGCCATGTTGGATCTTTCTCTCCTGTGGTGATGGAGAACCACAGGTTGGGAAGAAAGCACACCAACCGATTAAAGAGATTGCAGCGAAACGCTGACAGTGCTCCTTCCACATCTGCAGTTCCAAAAGCTACTCCGTCATTGACAAAAGATGCAGATGGTCGTCCGCATGATGATTGTGTGGTGGTGGAAGGTTTCCTAAACGGTAAATCCTGTCTGGCAGCATAA 1215 0.47 MEFNFRAGDLRTPSFQLPSLVQSHFSDPSLLRGLYCGFPVPNTEQIRNPNAHGDDILRKLEKERIRQEIISGEIARRRMLEEEVRRELMLERELAFRRSLGEKFLLDEQMAIGLNPRLNVIPAYDTRPLGERISFPQTVPQLAQSVKPADPKINMEKLIMLAQPSPEMYRQKRKAVKQDADDDAEHCPVVNKKPKDDWSCELCSVRVTSEKAFNEHLQGKKHKARESAKKRMQKTDTNAGSSSTSKNVEHSPKPIETTVTATTSDLEADVQAQPEVTRVGKDVVEVKTKDEEVVVKIQSTQDAEKQKGTEAEQARIPDAVNKRYKFWCDLCHVGSFSPVVMENHRLGRKHTNRLKRLQRNADSAPSTSAVPKATPSLTKDADGRPHDDCVVVEGFLNGKSCLAA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4618g00026 404 MobiDBLite consensus disorder prediction 234 255 - -
Pral4618g00026 404 Gene3D Classic Zinc Finger 186 239 - -
Pral4618g00026 404 PANTHER OS06G0651300 PROTEIN-RELATED 1 366 - -
Pral4618g00026 404 SUPERFAMILY beta-beta-alpha zinc fingers 185 232 IPR036236 -
Pral4618g00026 404 SUPERFAMILY beta-beta-alpha zinc fingers 317 358 IPR036236 -
Pral4618g00026 404 MobiDBLite consensus disorder prediction 214 255 - -
Pral4618g00026 404 MobiDBLite consensus disorder prediction 358 383 - -
Pral4618g00026 404 Gene3D Classic Zinc Finger 300 358 - -
Pral4618g00026 404 SMART ZnF_U1_5 323 357 IPR003604 GO:0003676|GO:0008270
Pral4618g00026 404 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Pral4618g00026 404 Pfam Zinc-finger of C2H2 type 326 350 - -
Pral4618g00026 404 Pfam Zinc-finger of C2H2 type 198 222 - -
Pral4618g00026 404 MobiDBLite consensus disorder prediction 358 374 - -
Pral4618g00026 404 ProSitePatterns Zinc finger C2H2 type domain signature. 200 222 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4618g00026 Pral-Chr4618 278866 281488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4618g00026 197 356 C2H2 Transcription Factor Family AT5G61190 26.875 2.18e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4618g00026 - - pcin:129308529 418.698