Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4618g00025 ATGGAGTTTAACTTTCGTGCGGGGGATCTGAGGACACCGTCTTTTCAACTCCCTTCTCTGGTACAAAGCCATTTCTCCGACCCCTCCTTGTTGCGAGGTGGTTTTCCGGTGCCGAACACTGAGCAAATACGGAATCCGAACGCCCACGGCGATGATATACTAAGGAAGCTGGAGAAAGAGCGAATCAGGCAAGAGATAATCTCCGGCGAGATAGCGAGGAGGCGAATGCTGGAGGAGGAAGTAAGAAGAGAGCTGATGCTGGAGAGAGAACTGGCTTTCCGAAGGAGTTTGGGAGAAAAGTTCTTGCTTGATGAGCAGATGGCAATAGGCTTGAATCCCAGACTCAACGTAATTCCTGCTTATGATACCCGCCCACTTGGGGAACGAATCTCATTTCCGCAAACTGTGCCCCAACTTGCTCAATCTGTGAAACCTGCTGATCCTAAGATTAACATGGAAAAATTGATCATGCTGGCTCAGCCAAGCCCAGAAATGTATAGACAAAAGCGGAAAGCTGTGAAACAAGATGCTGATGATGATGCAGAGCATTGTCCAGTTGTGAACAAAAAACCGAAGGATGACTGGAGCTGTGAACTATGTAGTGTGCGTGTCACAAGTGAGAAAGCTTTCAACGAACACCTTCAAGGTAAAAAGCACAAGGCTAGGGAATCTGCAAAAAAGAGAATGCAGAAGACCGATACGAATGCTGGCTCATCATCAACATCAAAGAACGTCGAACACTCTCCGAAACCTATTGAAACTACTGTGACCGCTACAACTTCAGATTTGGAAGCCGATGTTCAAGCTCAACCTGAAGTGACAAGGGTAGGCAAAGATGTTGTGGAAGTCAAAACCAAAGATGAGGAGGTTGTGGTGAAGATCCAAAGTACACAAGATGCAGAAAAGCAAAAGGGGACTGAGGCAGAGCAGGCAAGGATACCAGACGCAGTGAACAAGAGATACAAGTTTTGGTGTGACCTCTGCCATGTTGGATCTTTCTCTCCTGTGGTGATGGAGAACCACAGGTTGGGAAGAAAGCACACCAACCGATTAAAGAGATTGCAGCGAAACGCTGACAGTGCTCCTTCCACATCTGCAGTTCCAAAAGCTACTCCGTCATTGACAAAAGATGCAGATGGTCGTCCGCATGATGATTGTGTGGTGGTGGAAGGTTTCCTAAACGGTAAATCCTGTCTGGCAGCATAA 1206 0.4718 MEFNFRAGDLRTPSFQLPSLVQSHFSDPSLLRGGFPVPNTEQIRNPNAHGDDILRKLEKERIRQEIISGEIARRRMLEEEVRRELMLERELAFRRSLGEKFLLDEQMAIGLNPRLNVIPAYDTRPLGERISFPQTVPQLAQSVKPADPKINMEKLIMLAQPSPEMYRQKRKAVKQDADDDAEHCPVVNKKPKDDWSCELCSVRVTSEKAFNEHLQGKKHKARESAKKRMQKTDTNAGSSSTSKNVEHSPKPIETTVTATTSDLEADVQAQPEVTRVGKDVVEVKTKDEEVVVKIQSTQDAEKQKGTEAEQARIPDAVNKRYKFWCDLCHVGSFSPVVMENHRLGRKHTNRLKRLQRNADSAPSTSAVPKATPSLTKDADGRPHDDCVVVEGFLNGKSCLAA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4618g00025 401 MobiDBLite consensus disorder prediction 355 380 - -
Pral4618g00025 401 Pfam Zinc-finger of C2H2 type 195 219 - -
Pral4618g00025 401 Pfam Zinc-finger of C2H2 type 323 347 - -
Pral4618g00025 401 MobiDBLite consensus disorder prediction 211 251 - -
Pral4618g00025 401 MobiDBLite consensus disorder prediction 355 371 - -
Pral4618g00025 401 SUPERFAMILY beta-beta-alpha zinc fingers 182 229 IPR036236 -
Pral4618g00025 401 ProSitePatterns Zinc finger C2H2 type domain signature. 197 219 IPR013087 -
Pral4618g00025 401 SUPERFAMILY beta-beta-alpha zinc fingers 314 355 IPR036236 -
Pral4618g00025 401 Gene3D Classic Zinc Finger 183 236 - -
Pral4618g00025 401 PANTHER OS06G0651300 PROTEIN-RELATED 42 363 - -
Pral4618g00025 401 SMART ZnF_U1_5 320 354 IPR003604 GO:0003676|GO:0008270
Pral4618g00025 401 SMART ZnF_U1_5 192 226 IPR003604 GO:0003676|GO:0008270
Pral4618g00025 401 MobiDBLite consensus disorder prediction 231 251 - -
Pral4618g00025 401 Gene3D Classic Zinc Finger 297 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4618g00025 Pral-Chr4618 278866 281488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4618g00025 194 353 C2H2 Transcription Factor Family AT5G61190 26.875 2.02e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4618g00025 - - pcin:129308529 424.091